gene-family-evolution

Gene Family Evolution Analysis - Analyze gene family evolution: CAFE gene tree, homology, Ensembl gene tree, and taxonomy. Use this skill for molecular evolution tasks involving get cafe genetree member symbol get homology symbol get genetree member symbol get taxonomy classification. Combines 4 tools from 1 SCP server(s).

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Repository: SpectrAI-Initiative/InnoClaw
Last source activity: April 1, 2026 at 17:03
Detected SKILL.md language: English
Stars: 390
Forks: 28

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name	gene_family_evolution
description	Gene Family Evolution Analysis - Analyze gene family evolution: CAFE gene tree, homology, Ensembl gene tree, and taxonomy. Use this skill for molecular evolution tasks involving get cafe genetree member symbol get homology symbol get genetree member symbol get taxonomy classification. Combines 4 tools from 1 SCP server(s).

Gene Family Evolution Analysis

Discipline: Molecular Evolution | Tools Used: 4 | Servers: 1

Description

Analyze gene family evolution: CAFE gene tree, homology, Ensembl gene tree, and taxonomy.

Tools Used

get_cafe_genetree_member_symbol from ensembl-server (streamable-http) - https://scp.intern-ai.org.cn/api/v1/mcp/12/Origene-Ensembl
get_homology_symbol from ensembl-server (streamable-http) - https://scp.intern-ai.org.cn/api/v1/mcp/12/Origene-Ensembl
get_genetree_member_symbol from ensembl-server (streamable-http) - https://scp.intern-ai.org.cn/api/v1/mcp/12/Origene-Ensembl
get_taxonomy_classification from ensembl-server (streamable-http) - https://scp.intern-ai.org.cn/api/v1/mcp/12/Origene-Ensembl

Workflow

Get CAFE gene family evolution tree
Find homologs across species
Get full gene tree
Get taxonomic classification

Test Case

Input

{
    "gene"

import asyncio import json from contextlib import AsyncExitStack from mcp import ClientSession from mcp.client.streamable_http import streamablehttp_client from mcp.client.sse import sse_client SERVERS = { "ensembl-server": "https://scp.intern-ai.org.cn/api/v1/mcp/12/Origene-Ensembl" } async def connect(url, stack): transport = streamablehttp_client(url=url, headers={"SCP-HUB-API-KEY": "sk-b04409a1-b32b-4511-9aeb-22980abdc05c"}) read, write, _ = await stack.enter_async_context(transport) ctx = ClientSession(read, write) session = await stack.enter_async_context(ctx) await session.initialize() return session def parse(result): try: if hasattr(result, 'content') and result.content: c = result.content[0] if hasattr(c, 'text'): try: return json.loads(c.text) except: return c.text return str(result) except: return str(result) async def main(): async with AsyncExitStack() as stack: # Connect to required servers sessions = {} sessions["ensembl-server"] = await connect("https://scp.intern-ai.org.cn/api/v1/mcp/12/Origene-Ensembl", stack) # Execute workflow steps # Step 1: Get CAFE gene family evolution tree result_1 = await sessions["ensembl-server"].call_tool("get_cafe_genetree_member_symbol", arguments={}) data_1 = parse(result_1) print(f"Step 1 result: {json.dumps(data_1, indent=2, ensure_ascii=False)[:500]}") # Step 2: Find homologs across species result_2 = await sessions["ensembl-server"].call_tool("get_homology_symbol", arguments={}) data_2 = parse(result_2) print(f"Step 2 result: {json.dumps(data_2, indent=2, ensure_ascii=False)[:500]}") # Step 3: Get full gene tree result_3 = await sessions["ensembl-server"].call_tool("get_genetree_member_symbol", arguments={}) data_3 = parse(result_3) print(f"Step 3 result: {json.dumps(data_3, indent=2, ensure_ascii=False)[:500]}") # Step 4: Get taxonomic classification result_4 = await sessions["ensembl-server"].call_tool("get_taxonomy_classification", arguments={}) data_4 = parse(result_4) print(f"Step 4 result: {json.dumps(data_4, indent=2, ensure_ascii=False)[:500]}") # Cleanup print("Workflow complete!") if __name__ == "__main__": asyncio.run(main())

gene-family-evolution

Install options

Review the source files

Gene Family Evolution Analysis

Description

Tools Used

Workflow

Test Case

Input

Gene Family Evolution Analysis

Description

Tools Used

Workflow

Test Case

Input

Expected Steps

Usage Example

gene-family-evolution

Source facts

Install options

Review the source files

More from this repository

More from this repository

Gene Family Evolution Analysis

Description

Tools Used

Workflow

Test Case

Input

Gene Family Evolution Analysis

Description

Tools Used

Workflow

Test Case

Input

Expected Steps

Usage Example