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Rebuild ChromaDB Gold layer indexes after source data changes. Invoke manually — deletes and recreates collections, do NOT trigger automatically.
Install with Codex or Claude Copy this prompt, paste it into Codex, Claude, or another assistant, and let it review the skill page and install it for you.
Based on SOC occupation classification
Run the LangSmith evaluation suite and display pass/fail results
Add a new LangChain tool to the Medox ReAct agent. Use when creating a new tool file, registering it in the graph, and writing its test.
Create a git commit with Medox conventions (co-author, conventional type/scope). Invoke manually with /commit — do NOT trigger automatically.
Audit code changes on the current branch and update docs/ + .claude/rules/ to stay in sync. Run before /pr.
Create or update a GitHub pull request following Medox conventions (author spicode-bot, reviewer spideystreet). Invoke manually with /pr — do NOT trigger automatically.
Fetch and display the full status of the current PR — CI checks, GitHub Actions runs, reviews, and code comments — using GitHub MCP tools. Invoke manually with /pr-status.
| name | reindex-gold |
| description | Rebuild ChromaDB Gold layer indexes after source data changes. Invoke manually — deletes and recreates collections, do NOT trigger automatically. |
| disable-model-invocation | true |
Use when: BDPM/ANSM source data has changed, Silver models were updated, or ChromaDB collections are missing/stale.
Ensure Docker stack is running:
docker compose up -d
docker ps # verify chromadb and postgres containers are healthy
Ensure Silver is up to date (run if source data changed):
uv run dotenv -f dbt/.env run -- uv run dbt run --project-dir dbt --profiles-dir dbt
uv run dotenv -f dbt/.env run -- uv run dbt test --project-dir dbt --profiles-dir dbt
Materialize the Gold asset:
uv run dotenv -f .env run -- uv run dagster asset materialize --select gold_embeddings
Verify collections via chromadb-inspector agent or directly:
uv run dotenv -f .env run -- python -c "
import chromadb, os
c = chromadb.HttpClient(host=os.environ['CHROMA_HOST'], port=int(os.environ['CHROMA_PORT']))
for name in ['idx_bdpm_medicament_v1', 'idx_ansm_interaction_v1']:
print(name, c.get_collection(name).count())
"
Smoke-test the agent tools:
uv run dotenv -f .env run -- python -c "
from medox.agent.tools.tool_search_drug import search_drug
from medox.agent.tools.tool_check_interactions import check_interactions
print(search_drug.invoke({'query': 'doliprane'}))
print(check_interactions.invoke({'substance_a': 'warfarine', 'substance_b': 'ibuprofene'}))
"
| Collection | Content | Rebuilt from |
|---|---|---|
idx_bdpm_medicament_v1 | Drug denominations + metadata | silver_bdpm__medicament |
idx_ansm_interaction_v1 | ANSM interaction pairs | silver_ansm__interaction |
gold_embeddings fails: check CHROMA_HOST/CHROMA_PORT in .env and Docker status