vamseeachanta/workspace-hub - Page 73

llm-wiki

Karpathy's LLM Wiki — build and maintain a persistent, interlinked markdown knowledge base. Ingest sources, query compiled knowledge, and lint for consistency.

ml-paper-writing

Write publication-ready ML/AI papers for NeurIPS, ICML, ICLR, ACL, AAAI, COLM. Use when drafting papers from research repos, structuring arguments, verifying citations, or preparing camera-ready submissions. Includes LaTeX templates, reviewer guidelines, and…

research-paper-writing

End-to-end pipeline for writing ML/AI research papers — from experiment design through analysis, drafting, revision, and submission. Covers NeurIPS, ICML, ICLR, ACL, AAAI, COLM. Integrates automated experiment monitoring, statistical analysis, iterative…

wiki-context

Auto-query llm-wiki domains for relevant context before executing domain tasks

clinical-trial-protocol

Generate clinical trial protocols for medical devices or drugs through a modular, waypoint-based architecture with research-only and full protocol modes.

instrument-data-allotrope

Convert laboratory instrument output files (PDF, CSV, Excel, TXT) to Allotrope Simple Model (ASM) JSON format or flattened 2D CSV for LIMS systems and data lakes.

nextflow-pipelines

Run nf-core bioinformatics pipelines (rnaseq, sarek, atacseq) on sequencing data for gene expression, variant calling, and chromatin accessibility analyses.

scientific-problem-selection

Systematic framework for scientific problem selection, project ideation, troubleshooting stuck projects, and strategic research decisions.

scvi-tools

Deep learning for single-cell analysis using scvi-tools: data integration, batch correction, multi-modal analysis, reference mapping, and more.

single-cell-rna-qc

Performs quality control on single-cell RNA-seq data (.h5ad or .h5 files) using scverse best practices with MAD-based filtering and comprehensive visualizations.

absolute-path-review-dispatch-guard

Prevent Codex/Gemini adversarial review dispatch failures caused by relative prompt-file paths and background workdir drift.

absolute-path-review-prompt-dispatch

Prevent adversarial review dispatch failures caused by relative prompt paths, superseded background sessions, and stale completion notices when launching Codex/Gemini review jobs.

adversarial-review-prompt-refresh-guard

Prevent stale plan/code review prompts from being sent to Codex/Gemini after the underlying artifact changed.

approval-stage-plan-hygiene

Prevent approval-stage adversarial review churn by keeping plans implementation-focused, schema-complete, and free of stale review-process narration.

approval-stage-plan-review-sweep

Run an approval-stage adversarial cross-review sweep across multiple GitHub issues, drafting any missing canonical plan artifacts before dispatching Codex/Gemini reviews.

artifact-inline-no-tools-plan-review

Recover adversarial plan reviews on large or sandbox-hostile repos by embedding grounded facts + full plan text directly in a compact prompt and explicitly forbidding reviewer tool use.

artifact-inline-plan-rereview

Recover adversarial plan reviews when providers keep reading stale remote/main content instead of the revised local artifact.

bulk-docstring-addition

Add Google-style docstrings to all public functions and classes in a Python package. Uses AST parsing for precise gap detection, priority ranking by coverage ratio, and multi-file patching.

compact-no-tools-plan-review-recovery

Recover adversarial plan reviews in large or tool-constrained repos by using compact self-contained prompts that forbid tool use and rely only on embedded grounded facts plus the plan text.

gemini-review-capacity-recovery

Handle Gemini adversarial-review runs that emit repeated 429 capacity errors before either recovering with a real verdict or failing unavailable.

gh-work-execution-checklist

Compact live-execution checklist companion for approved GitHub issue work. Use during active implementation as a fast operational route; gh-work-execution remains the canonical source of truth.

gh-work-execution

Canonical GitHub issue execution route after plan approval — strengthened resource intelligence, TDD-first implementation, targeted validation, adversarial review, delegation controls for Codex agent teams, GitHub progress posting, future-issue capture, and…

gsd-operational-audit

Audit a repo's live GSD/get-shit-done workflow state against docs, issues, and runtime outputs to find stale issues, automation reliability gaps, parser drift, migration residue, and policy contradictions.

multi-machine-ai-readiness-and-issue-triage

Assess a multi-machine, multi-repo AI-enabled workspace for readiness, provider allocation, and issue prioritization.

multi-provider-adversarial-review

Dispatch parallel adversarial reviews to Codex and Gemini CLIs for plans or code artifacts. Use when the AI Review Routing Policy requires two- or three-provider review — architecture-heavy, security-affecting, cross-module, or high-stakes changes.

overnight-parallel-agent-prompts

Design self-contained prompts for 3-5 terminals to run overnight without supervision. Ensures zero git contention, provider-optimal allocation, and a clear morning deliverable summary.

overnight-verify-close-batch

Build overnight parallel batches that close stale-open GitHub issues by proving landed work already satisfies the issue, instead of wasting implementation lanes on redoing completed work.

parallel-approved-issue-worktrees

Launch approved GitHub issue implementation in parallel using isolated git worktrees, committed execution-pack prompts, local plan-approved markers, and direct background Codex runs when delegate_task workers are unreliable for real repo writes.

plan-rerun-review-state-sync

Keep iterative plan-review reruns truthful by syncing prompt files, canonical review artifacts, and the plan's own review-summary narrative after each adversarial wave.

plan-resubmit-wave-prompts

Run a planning-only multi-terminal wave to harden blocked `status:plan-review` issues for fresh adversarial re-review, with zero implementation work and explicit path ownership.

plan-review-adversarial-hardening

Class-level workflow for plan-review hardening, adversarial review reruns, artifact grounding, approval hygiene, and prompt/path drift recovery.

plan

Plan mode for Hermes — inspect context, write a markdown plan into the active workspace's `.hermes/plans/` directory, and do not execute the work.

provider-review-prompt-path-guard

Prevent adversarial review dispatch failures caused by sandbox/tmp path mismatches and provider CLI working-directory drift when launching Codex or Gemini with prompt files.

re-review-local-plan-artifact-grounding

Prevent stale adversarial re-reviews by forcing Codex/Gemini to review the exact revised local plan artifact instead of stale GitHub issue text or default-branch content.

single-terminal-gh-issue-prompts

Generate live issue-specific Codex prompts for a single terminal, with repo-aware path contracts and plan-gate safety checks.

skeleton-test-coverage-uplift

Write test suites for SKELETON packages (zero test coverage) to uplift them to DEVELOPMENT maturity. Handles non-importable modules, optional dependencies, separate sub-repos, and Flask/web packages without runtime.

subagent-driven-development

Use when executing implementation plans with independent tasks. Dispatches fresh delegate_task per task with two-stage review (spec compliance then code quality).

workspace-hub-batch-issue-execution

Deprecated alias for gh-work-execution.

source-command-compound-extended

Run cross-agent memory bridge. Sync learnings between machine agents, update shared knowledge. Phase 5 of #1760.

source-command-gsd-from-gsd2

Import a GSD-2 (.gsd/) project back to GSD v1 (.planning/) format