scrna-cluster

name	scrna-cluster
description	Cluster single-cell RNA-seq data and annotate cell types. Covers normalization, HVG selection, PCA, neighbors, Leiden clustering, and marker-gene-based annotation. Use when the user has a cell-by-gene matrix and wants cell-type clusters.
domains	["bioinfo","scrna"]

scRNA clustering

Standard Scanpy clustering + annotation pipeline.

Steps

1. Normalize and log1p.
2. Select highly variable genes.
3. PCA, neighbors graph, Leiden clustering.
4. Rank marker genes per cluster, annotate cell types.