ionize

name	ionize
description	Use this skill when the user wants to build a knowledge graph from a codebase or mixed corpus and view it in Obsidian — e.g. "ionize this repo," "map the code structure," "build a knowledge graph from these files," "visualize the call graph / schema relationships," or "extract the concepts from these docs into a graph." Runs a 3-pass pipeline (Pass 1 code via tree-sitter + SQL, local & free; Pass 2 audio/video via faster-whisper; Pass 3 docs/papers/images via Claude subagents) and emits an Obsidian Canvas plus per-node markdown notes. Do NOT use to write application code or refactor — this skill only produces a graph. Output is always graph.json + graph.canvas + nodes/*.md.
license	Internal

Ionize

Turn a corpus into a knowledge graph rendered as an Obsidian Canvas + linked notes. Faithful, deterministic, and cost-staged: the cheap local passes run first, the LLM pass runs only on the files that need it.

When to use this skill

• "Ionize this repo" / "map the code structure of X"
• "Build a knowledge graph from these files"
• "Visualize the call graph" / "show the schema relationships in this SQL"
• "Extract the concepts from these docs into a graph" (Pass 3)

When NOT to use this skill

• Writing or refactoring application code. This skill produces a graph, not code changes.
• A single lookup. If the user wants one function's callers, grep — don't build the whole graph.
• Sending source code to an LLM. Code files never go to the semantic extractor; Pass 1 is local-only by design.

Non-negotiables

These are the rules. Violations make the output wrong or non-reproducible.

1. Determinism. Identical input → byte-identical graph.canvas. No wall-clock timestamps, no randomness, no force-layout. The corpus walk is sorted; layout is a banded grid keyed on type + id. Verify by running twice and diffing.
2. Code never reaches the LLM. Pass 1 (tree-sitter + node-sql-parser) is fully local. If the corpus is only code, Pass 3 is skipped entirely. Semantic extraction (Pass 3) is reserved for docs, papers, images, and transcripts.
3. Every pass emits the same contract. Normalized { nodes, edges } (see references/graph-contract.md). merge-graph unions pass outputs; to-canvas is the only renderer.
4. SQL is deterministic, not LLM-guessed. Tables, views, foreign keys, and JOINs are parsed from the AST (node-sql-parser), never inferred.
5. Extensibility over breadth. Languages live in a registry — adding one is a row + a .scm query file, never edits to the extractor. Don't hard-code language logic into the pipeline.
6. Fail loud, early. Validate each .scm query compiles at startup. Skip an unparseable SQL statement (count it), but never abort the whole file silently.

Workflow

Run passes in order; each writes a {nodes,edges} fragment, then merge + render.

Pass 1 — Code structure (local, free). Walk the corpus deterministically. Detect language by extension via the registry. Parse code with tree-sitter .scm queries → classes, functions, imports, call graph, comments. Parse .sql with node-sql-parser → tables, views, foreign keys, JOIN relationships. Emit graph.json. This is the only working pass in v1. See references/pass1-code-graph.md and references/sql-extraction.md.

Pass 2 — Audio/video (local, free) — STUB. Transcribe media with faster-whisper, seeding the prompt with the current top god-nodes (most-connected concepts so far). Cache transcripts; re-runs skip processed files. Emit media/transcript nodes + MENTIONS edges. Entrypoint present; exits 0 with an empty fragment in v1. Contract in references/workflow.md.

Pass 3 — Docs/papers/images (Claude subagents, costs tokens) — STUB. Run Claude in parallel over markdown/PDF/images/transcripts. Each subagent reads a batch and returns a JSON fragment (nodes, edges, groups); fragments merge into the graph. Skipped entirely for code-only corpora. Entrypoint present; exits 0 with an empty fragment in v1. Contract in references/workflow.md.

Merge. merge-graph dedups nodes by id (first wins), resolves unresolved ref: CALLS targets to declared symbols within the same file/module (drops the rest to avoid fan-out), and unions edges.

Render. to-canvas lays out nodes with a deterministic banded grid and writes graph.canvas (JSONCanvas 1.0) + nodes/*.md (YAML frontmatter + [[wikilink]] edges). The canvas and the wikilink graph are two renderings of the same data.

Outputs

Written to a graph/ directory under the output vault root (never read back into the LLM):

graph/
├── graph.json       ← normalized {nodes, edges} from Pass 1 (+ later passes)
├── graph.canvas     ← JSONCanvas 1.0 — open in Obsidian Canvas
└── nodes/*.md       ← per-node notes, linked by [[wikilinks]] for the Graph View

The output root defaults to --root (the scanned dir), so canvas file: refs stay vault-relative (graph/nodes/…) and the graph lands in the codebase you scanned — not the plugin cache the skill installs into. Override with --out <vault> to scan one tree and write the graph into another (e.g. your Obsidian vault).

CLI lives in this skill dir; run with Bun (.ts runs natively, no build step — see package.json scripts). Happy path: bun run ionize -- --root <dir> (add --out <vault> to redirect output).

Reading order

When this skill is loaded, read in this order:

1. This file (you're here)
2. references/workflow.md — the 3-pass pipeline, run order, Pass 2/3 contracts
3. references/graph-contract.md — the normalized {nodes,edges} shape (the spine)
4. references/pass1-code-graph.md — tree-sitter approach, language registry, capture vocabulary
5. references/sql-extraction.md — node-sql-parser → tables/views/FK/JOIN mapping
6. references/canvas-schema.md — JSONCanvas 1.0 + the deterministic layout

Marketplace plugin

This directory is the ionize plugin and also runs in-place as a project skill. The vault repo hosts it as a marketplace — the marketplace manifest lives at the vault root (.claude-plugin/marketplace.json, source: ./.claude/skills/ionize), not here:

• .claude-plugin/plugin.json — plugin manifest (name, version, author, license, keywords); what /plugin install reads.
• scripts/validate.sh (bun run validate) — validates this plugin: JSON parses, SKILL.md frontmatter, plugin.json fields.
• LICENSE (MIT), PUBLISHING.md — the publish + local-install steps.

Install: /plugin marketplace add zeon-kun/ionize → /plugin install ionize@ionize. Full steps in PUBLISHING.md.