bioskills-motif-deviation

Estrellas102

Forks13

Actualizado6 de julio de 2026 a las 12:06

Compute per-sample/per-cell TF motif accessibility deviation z-scores with chromVAR (bulk, Signac, ArchR) and optionally refine TF activity with DecoupleR.

Instalación

Instalar con Codex o Claude Copia este prompt, pégalo en Codex, Claude u otro asistente, y deja que revise la página de la skill y la instale por ti.

Ejecutar en Manus

Fuente

ai4nucleome

ai4nucleome/BioMaster

Abrir repositorio de GitHub Ver repositorios del creador

Descarga

Ejecutar en Manus

Ocupaciones relacionadasSOC

Basado en la clasificación ocupacional SOC

Desarrolladores de softwareOcupaciones informáticas y matemáticas·SOC 15-1252

Explorador de archivos

4 archivos

SKILL.md

readonly

name	bioskills-motif-deviation
description	Compute per-sample/per-cell TF motif accessibility deviation z-scores with chromVAR (bulk, Signac, ArchR) and optionally refine TF activity with DecoupleR.
domain	single-cell
primary_tool	chromVAR
methods	["chromVAR","motifmatchr","JASPAR2024","TFBSTools","SummarizedExperiment","limma","Signac","ArchR","decoupler"]
macro_tags	["workflow","motif-deviation","chromvar","tf-activity","atac"]
micro_tags	["chromVAR","motifmatchr","JASPAR2024","TFBSTools","SummarizedExperiment","limma","Signac","ArchR","decoupler","qc","filtering","gc-bias","summarized-experiment","motif-matching","jaspar","cisbp","chromvar","background-peaks","deviations","variability","differential","findmarkers","marker-features","tf-activity","consensus","multi-omics"]
source	bioskills-motif-deviation
status	active
enabled	true

Bioskills Motif Deviation

Más de este repositorio

mismo repositorio

biomaster

ai4nucleome/BioMaster

Load BioMaster as one integrated skill-driven bioinformatics assistant.

2026-07-08102

biomaster

ai4nucleome/BioMaster

BioMaster conversational bioinformatics assistant; starts workflows only after execution intent or empty activation.

2026-07-08102

bioclaw-cell-annotation

ai4nucleome/BioMaster

Automated and marker-guided single-cell cell type annotation using CellTypist, marker review, reference transfer, and confidence-aware label curation.

2026-07-06102

bioclaw-hub-cell-communication

ai4nucleome/BioMaster

Ligand-receptor communication inference in single-cell or spatial data with sender-receiver summaries and cautious interpretation.

2026-07-06102

bioclaw-hub-multiome-scatac

ai4nucleome/BioMaster

Workflow for paired or integrated single-cell RNA and ATAC analysis with multimodal latent spaces and regulatory interpretation.

2026-07-06102

bioclaw-hub-spatial-transcriptomics

ai4nucleome/BioMaster

Workflow for spatial transcriptomics preprocessing, domain detection, deconvolution, neighborhood analysis, and publication-ready spatial maps.

2026-07-06102

name	bioskills-motif-deviation
description	Compute per-sample/per-cell TF motif accessibility deviation z-scores with chromVAR (bulk, Signac, ArchR) and optionally refine TF activity with DecoupleR.
domain	single-cell
primary_tool	chromVAR
methods	["chromVAR","motifmatchr","JASPAR2024","TFBSTools","SummarizedExperiment","limma","Signac","ArchR","decoupler"]
macro_tags	["workflow","motif-deviation","chromvar","tf-activity","atac"]
micro_tags	["chromVAR","motifmatchr","JASPAR2024","TFBSTools","SummarizedExperiment","limma","Signac","ArchR","decoupler","qc","filtering","gc-bias","summarized-experiment","motif-matching","jaspar","cisbp","chromvar","background-peaks","deviations","variability","differential","findmarkers","marker-features","tf-activity","consensus","multi-omics"]
source	bioskills-motif-deviation
status	active
enabled	true