ResearchProjectTemplate

Convert PDFs to Markdown using Mistral OCR API with image extraction. Use when you need to extract structured text and images from PDFs, especially for scanned documents or documents with complex formatting. Outputs Markdown with embedded images.

Create factual working journal entries in Notes/WorkingJournal/ after completing analysis work. Use when user asks to "summarize work", "document results", or "create working journal entry". Ensures code is committed, copies figures to attachments, and creates objective summaries with citations.

Read and analyze academic papers from Zotero library. Use when the user requests to read, access, or analyze a paper by title, author, or topic from their Zotero library. Automatically searches Zotero, converts PDFs to markdown, saves to Notes/PaperInMarkdown, and provides analysis.