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add-feature

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Actualizado1 de julio de 2026 a las 14:47

Procedure for adding a feature to gbcms following its Git Flow and Rust/Python architecture (branch from develop, plan the layer, implement, sync type stubs, add tests with the 4 counting invariants, update docs/CHANGELOG, QA, PR to develop). Use when starting new feature work.

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msk-access

msk-access/gbcms

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SKILL.md

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name	add-feature
description	Procedure for adding a feature to gbcms following its Git Flow and Rust/Python architecture (branch from develop, plan the layer, implement, sync type stubs, add tests with the 4 counting invariants, update docs/CHANGELOG, QA, PR to develop). Use when starting new feature work.

add-feature

Create feature branch:

git checkout develop && git pull origin develop
git checkout -b feature/<scope>-<description>

Plan the feature:
- Identify the layer: Rust counting, Python orchestration, CLI, or docs
- Check .agents/rules/architecture.md for the Rust/Python boundary
- Check existing code for reusable patterns (don't re-implement)
Implement:
- Rust: rust/src/ → rebuild with maturin develop --release
- Python: src/gbcms/
- CLI option: add to cli.py, validate in models/core.py
- Type stubs: update src/gbcms/_rs.pyi (the single stub for gbcms._rs)
- If it changes a CLI default/filter: update nextflow/nextflow.config too
Add tests: assert all 4 counting invariants; cover edge cases.
Update docs: docs/cli/*, docs/nextflow/parameters.md (if NF param), docs/reference/output-formats.md (if schema changed), CHANGELOG ## [Unreleased].
Run QA (see the qa-check skill).

PR to develop:

git push origin feature/<scope>-<description>
gh pr create --base develop --title "feat(<scope>): <description>"

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name	add-feature
description	Procedure for adding a feature to gbcms following its Git Flow and Rust/Python architecture (branch from develop, plan the layer, implement, sync type stubs, add tests with the 4 counting invariants, update docs/CHANGELOG, QA, PR to develop). Use when starting new feature work.

add-feature

Create feature branch:

git checkout develop && git pull origin develop
git checkout -b feature/<scope>-<description>

Plan the feature:
- Identify the layer: Rust counting, Python orchestration, CLI, or docs
- Check .agents/rules/architecture.md for the Rust/Python boundary
- Check existing code for reusable patterns (don't re-implement)
Implement:
- Rust: rust/src/ → rebuild with maturin develop --release
- Python: src/gbcms/
- CLI option: add to cli.py, validate in models/core.py
- Type stubs: update src/gbcms/_rs.pyi (the single stub for gbcms._rs)
- If it changes a CLI default/filter: update nextflow/nextflow.config too
Add tests: assert all 4 counting invariants; cover edge cases.
Update docs: docs/cli/*, docs/nextflow/parameters.md (if NF param), docs/reference/output-formats.md (if schema changed), CHANGELOG ## [Unreleased].
Run QA (see the qa-check skill).

PR to develop:

git push origin feature/<scope>-<description>
gh pr create --base develop --title "feat(<scope>): <description>"