supervisor-clean

name	supervisor-clean
description	Remove all supervisor leftovers: clones, logs, state, backups
user_invocable	true

/supervisor-clean — Remove All Leftovers

Stop everything, then remove all artifacts left by the supervisor, researcher variants, and E2E tests. Does NOT touch canonical repos or the hub itself.

Configuration

Read .env from the workspace root for SUPERVISOR_REPO, RAG_TARGET_REPO.

Steps

1. Stop everything first

# Stop any running researcher variants
cd <SUPERVISOR_REPO> && $CLAUDE_CONFIG_DIRS pixi run -e dev researcher-variant list --json

For each running variant:

cd <SUPERVISOR_REPO> && $CLAUDE_CONFIG_DIRS pixi run -e dev researcher-variant stop --id <variant_id>
cd <SUPERVISOR_REPO> && $CLAUDE_CONFIG_DIRS pixi run -e dev researcher-variant discard --id <variant_id>

Then stop the main researcher:

cd <SUPERVISOR_REPO> && $CLAUDE_CONFIG_DIRS pixi run -e dev researcher-stop

2. Remove researcher variant clones

rm -rf /tmp/sar-research-loop--*
rm -rf <RAG_TARGET_REPO>--*

3. Remove target merge backups

rm -rf <RAG_TARGET_REPO>.pre-merge-backup

4. Remove supervisor state

rm -rf <SUPERVISOR_REPO>/.supervisor/snapshots
rm -f <SUPERVISOR_REPO>/.supervisor/history.jsonl
rm -f <SUPERVISOR_REPO>/.supervisor/latest_snapshot.json
rm -f <SUPERVISOR_REPO>/.supervisor/status.jsonl
rm -f <SUPERVISOR_REPO>/.supervisor/prompt-edits.jsonl
rm -f <SUPERVISOR_REPO>/.supervisor/parked-*.json
rm -f <SUPERVISOR_REPO>/.supervisor/start-state.json
rm -f <SUPERVISOR_REPO>/.supervisor/start--*-state.json
rm -f <SUPERVISOR_REPO>/.supervisor/merge.lock
rm -f <SUPERVISOR_REPO>/.supervisor/*.pid

5. Remove logs

rm -f /tmp/cc-sar-supervisor*.log

6. Remove target temp files

rm -rf /tmp/rag-index-cache
rm -rf /tmp/rag-index-cache--*
rm -f /tmp/rag-eval-report*.json

7. Remove research loop results

rm -f <RESEARCH_LOOP_REPO>/results.tsv

8. Remove Claude Code runtime artifacts

rm -f .claude/scheduled_tasks.lock
rm -f .claude/scheduled_tasks.json

9. Report

List what was removed. Verify:

echo "=== Remaining ==="
ls <SUPERVISOR_REPO>/.supervisor/ 2>/dev/null || echo "state: clean"
ls -d /tmp/sar-research-loop--* 2>/dev/null || echo "clones: clean"
ls -d <RAG_TARGET_REPO>--* 2>/dev/null || echo "target clones: clean"
ls /tmp/cc-sar-supervisor*.log 2>/dev/null || echo "logs: clean"

Important

• ALWAYS stop before cleaning — never rm -rf a directory that a running process is using
• This skill does NOT modify canonical repos (sar-rag-target, sar-research-loop, sar-supervisor code)
• This skill does NOT touch the hub (take3-pe)
• To also reset the target code to the original seed, run /target-reset separately