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Molecular biology toolkit. Use for FASTA parsing, sequence analysis, and translation.
Shared operational contract for all MedSci agents: sequential execution, planning phase, retry limits, evidence standards.
Isolated exploratory code execution with medsci-sandbox tools. Use when analysis requires custom code beyond existing domain MCP tools.
AlphaFold DB for predicted protein structures and pLDDT confidence scores
ChEMBL database access for bioactivity data and target search
Datamol for molecular manipulation, SMILES processing, and cheminformatics
Molecular ML with DeepChem - featurizers, models, and molecular property prediction
| name | biopython |
| description | Molecular biology toolkit. Use for FASTA parsing, sequence analysis, and translation. |
parse_fasta(path) — Read FASTA file, return sequence metadataanalyze_sequence(sequence, seq_type) — Composition, MW, statsanalyze_sequence(sequence, seq_type="DNA", translate=true) — Translate DNA→protein