zotero-keeper-harness

name	zotero-keeper-harness
description	Cline harness for Zotero/PubMed assistant workflows bundled with Pharmacy MCP. Triggers: zotero keeper, zotero mcp, full check, release checklist, workflow, Cline.

Zotero Keeper: Cline Harness Skill

Use this skill when working in this repository with Cline and you need the reliable loop: understand the Zotero/PubMed boundary, make a scoped change, and verify Pharmacy MCP. Extension-specific Zotero Keeper commands are legacy reference material unless an external extension repository is explicitly opened.

What To Use First

• Rules: .clinerules/
• Workflows: .clinerules/workflows/
  • Run /zotero-full-check.md for local gates.
  • Treat extension release workflows as legacy unless the referenced paths exist.
  • Run /zotero-skills-audit.md after changing skills or rules.
• Existing skills: .claude/skills/
  • If a .claude/skills instruction conflicts with current repo behavior, prefer .clinerules/.

Pharmacy MCP Canonical Commands

• Tests: uv run pytest --cov=src --cov-report=term-missing
• Lint: uv run ruff check src tests scripts
• Type check: uv run mypy src
• Security scan: uv run bandit -q -r src
• Build: uv build
• Artifact audit: uv run python scripts/audit_release_artifacts.py dist

Product Guardrails

• Keep Zotero local-library behavior separate from PubMed literature-search behavior.
• Use import_articles as the preferred bridge from PubMed results/RIS into Zotero.
• Do not bypass the NCBI email policy; use explicit settings or the git email fallback.
• Do not run npm, VSIX, mcp-server/, vscode-extension/, or external/pubmed-search-mcp/ commands from this repository unless those paths exist in the active workspace.