bioclaw-hub-spatial-transcriptomics

Étoiles102

Forks13

Mis à jour6 juillet 2026 à 12:06

Workflow for spatial transcriptomics preprocessing, domain detection, deconvolution, neighborhood analysis, and publication-ready spatial maps.

Installation

Installer avec Codex ou Claude Copiez ce prompt, collez-le dans Codex, Claude ou un autre assistant, puis laissez-le vérifier la page du skill et l'installer pour vous.

Exécuter dans Manus

Source

ai4nucleome

ai4nucleome/BioMaster

Ouvrir le dépôt GitHub Voir les dépôts du créateur

Téléchargement

Exécuter dans Manus

Métiers associésSOC

Basé sur la classification professionnelle SOC

Biologistes, autresSciences de la vie, physiques et sociales·SOC 19-1029

Explorateur de fichiers

4 fichiers

SKILL.md

readonly

name	bioclaw-hub-spatial-transcriptomics
description	Workflow for spatial transcriptomics preprocessing, domain detection, deconvolution, neighborhood analysis, and publication-ready spatial maps.
domain	single-cell
primary_tool	scanpy
methods	["scanpy","squidpy","matplotlib","seaborn"]
macro_tags	["workflow","spatial-transcriptomics","domain-detection","deconvolution","neighborhood-analysis","spatial-visualization"]
micro_tags	["scanpy","squidpy","matplotlib","seaborn","spatial-validation","coordinate-check","barcode-alignment","qc","normalization","hvg-selection","spatial-neighbors","pca","leiden","domain-detection","spatial-autocorrelation","marker-genes","deconvolution","cell-type-scoring","spatial-regression","neighborhood-enrichment","interaction-matrix","ripley","ligand-receptor","spatial-plotting","visualization","publication-figures","export","save-results","csv-output","h5ad"]
source	bioclaw-hub-spatial-transcriptomics
status	active
enabled	true

Bioclaw Hub Spatial Transcriptomics

Plus depuis ce dépôt

même dépôt

biomaster

ai4nucleome/BioMaster

Load BioMaster as one integrated skill-driven bioinformatics assistant.

2026-07-08102

biomaster

ai4nucleome/BioMaster

BioMaster conversational bioinformatics assistant; starts workflows only after execution intent or empty activation.

2026-07-08102

bioclaw-cell-annotation

ai4nucleome/BioMaster

Automated and marker-guided single-cell cell type annotation using CellTypist, marker review, reference transfer, and confidence-aware label curation.

2026-07-06102

bioclaw-hub-cell-communication

ai4nucleome/BioMaster

Ligand-receptor communication inference in single-cell or spatial data with sender-receiver summaries and cautious interpretation.

2026-07-06102

bioclaw-hub-multiome-scatac

ai4nucleome/BioMaster

Workflow for paired or integrated single-cell RNA and ATAC analysis with multimodal latent spaces and regulatory interpretation.

2026-07-06102

bioclaw-hub-trajectory-lineage

ai4nucleome/BioMaster

Pseudotime, lineage branching, and state-transition analysis for single-cell data with coherent embeddings and annotations.

2026-07-06102

name	bioclaw-hub-spatial-transcriptomics
description	Workflow for spatial transcriptomics preprocessing, domain detection, deconvolution, neighborhood analysis, and publication-ready spatial maps.
domain	single-cell
primary_tool	scanpy
methods	["scanpy","squidpy","matplotlib","seaborn"]
macro_tags	["workflow","spatial-transcriptomics","domain-detection","deconvolution","neighborhood-analysis","spatial-visualization"]
micro_tags	["scanpy","squidpy","matplotlib","seaborn","spatial-validation","coordinate-check","barcode-alignment","qc","normalization","hvg-selection","spatial-neighbors","pca","leiden","domain-detection","spatial-autocorrelation","marker-genes","deconvolution","cell-type-scoring","spatial-regression","neighborhood-enrichment","interaction-matrix","ripley","ligand-receptor","spatial-plotting","visualization","publication-figures","export","save-results","csv-output","h5ad"]
source	bioclaw-hub-spatial-transcriptomics
status	active
enabled	true