| Core I/O | 22 | run, chain, read/write/append files, list dirs, processes, clipboard, archive, search |
| Sessions | 11 | Persistent shell sessions with env, history, checkpoints, recovery |
| Transforms | 14 | JSON, CSV, base64, diff, find-replace, hash, grep, scaffold |
| PowerShell | 6 | Persistent PowerShell sessions (psession_create/run/read/list/destroy/history) |
| Git | 13 | git_status, git_log, git_commit, git_stash, git_reset, git_diff, git_branch, git_checkout, git_clone, git_pull, git_push, git_remote, git_diff_summary |
| Breadcrumbs | 7 | Operation tracking: start, step, complete, abort, status, backup, clear |
| HTTP | 4 | http_request, http_fetch, http_scrape, http_download |
| Security | 2 | Command validation, audit logging |
| Shortcuts | 3 | Predefined command shortcuts with chaining |
| Smart | 2 | smart_exec (auto-pick shell), smart_read (auto-format file read) |
| Utils | 4 | Config backup, validation, markdown-to-docx |
| Bag/Tag | 3 | Key-value scratch storage for cross-tool state |
| SQLite | 1 | Direct SQLite queries |
| Registry | 1 | Windows registry reads |
| Health | 3 | Server health, tool fallback, deploy preflight |
| Plan | 2 | plan, plan_assemble |