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Explain where project data and outputs live (e.g. GPFS, data/, predictions/) from knowledge base.
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Basé sur la classification professionnelle SOC
Manage the BioAPEX current-feature workflow from scoping through review and completion
Turn an analysis request into a Slurm-ready execution plan with commands, resource assumptions, and job structure.
Scale a buffer recipe to a target volume and compute component masses/volumes.
Save a fetched summary or document to the knowledge base for later retrieval (e.g. after PubMed/UniProt lookup).
Interpret scRNA clusters using marker genes and suggest cell type or state.
Critically evaluate a perturbation hypothesis — challenge assumptions, propose negative controls, and flag confounders.
| name | data_location_help |
| description | Explain where project data and outputs live (e.g. GPFS, data/, predictions/) from knowledge base. |
| category | bio/compute |
| version | 1 |
| requires_tools | ["search_knowledge_base"] |
| requires_network | false |
| user_invocable | true |
| species | any |
| modality | compute |
| stage | utilities |
| stability | experimental |
| safety_level | low |
User asks where data is stored, where to find results, or what directories to use for a pipeline.
Search: Use search_knowledge_base with query like "data location", "where is data", "GPFS", "predictions directory", or the topic.
Summarize: Return paths and conventions (e.g. data/ for raw, predictions/ for outputs, tmp/ for scratch). If nothing found, state that and suggest asking the lab or checking project README.
Remind: Note that paths may be project-relative (e.g. backend is project root for read_file; for terminal, CWD may differ).
