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Get a short summary of gene function from UniProt/NCBI Gene and related pathways.
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Basé sur la classification professionnelle SOC
| name | gene_function_summary |
| description | Get a short summary of gene function from UniProt/NCBI Gene and related pathways. |
| category | bio/literature |
| version | 1 |
| requires_tools | ["fetch_url"] |
| requires_network | true |
| user_invocable | true |
| species | any |
| modality | literature |
| stage | interpretation |
| stability | experimental |
| safety_level | low |
User asks what a gene does, or for a brief summary of a gene's function and pathways.
UniProt: Fetch from UniProt REST:
https://rest.uniprot.org/uniprotkb/search?query=gene_exact:{gene}&format=json&fields=gene_names,protein_name,function,organism_nameNCBI Gene (if needed): If UniProt returns little, try:
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term={gene}[sym]&retmode=json then efetch for description.Summarize: Combine into 2–4 sentences: name, main function, organism, and optionally pathway/key terms.
Manage the BioAPEX current-feature workflow from scoping through review and completion
Turn an analysis request into a Slurm-ready execution plan with commands, resource assumptions, and job structure.
Scale a buffer recipe to a target volume and compute component masses/volumes.
Save a fetched summary or document to the knowledge base for later retrieval (e.g. after PubMed/UniProt lookup).
Interpret scRNA clusters using marker genes and suggest cell type or state.
Critically evaluate a perturbation hypothesis — challenge assumptions, propose negative controls, and flag confounders.