biomed-multi-omic

Generate, modify, debug, and run YAML configs and `bmfm-targets-run` CLI commands for the biomed-multi-omic (BMFM) package — scRNA (bmfm-rna) and DNA (bmfm-dna) foundation models. Use this skill whenever the user is working in the BiomedSciAI/biomed-multi-omic repo, mentions `bmfm-targets-run`, wants to run prediction / fine-tuning / pretraining / interpretation with BMFM checkpoints (e.g. `ibm-research/biomed.rna.bert.*`, `ibm-research/biomed.rna.llama.*`, `ibm-research/biomed.dna.modernbert.*`), asks about Hydra configs under `run/`, needs to translate a published checkpoint config into a fine-tuning config, picks a loss for a new downstream task, or is debugging a failing Hydra/yaml config in this codebase. Trigger even if the user doesn't say "yaml" or "config" — e.g. "I have an h5ad and I want embeddings" or "help me finetune on celltype" are core use cases for this skill.