stanobj

Use when the user asks to "standardize single-cell data", "convert to h5ad", "convert Seurat to h5ad", "convert RDS to h5ad", "standardize scRNA-seq", "convert 10x to h5ad", "convert CSV/TSV expression matrix", "convert MTX files", "read Seurat object", "convert SingleCellExperiment", "harmonize single-cell metadata", or mentions converting any single-cell format (rds, mtx, csv, tsv, h5, hdf5, loom) into canonical h5ad. Do NOT use for reading/inspecting existing h5ad files (that is scrna-reader), gene ID conversion (that is stangene), or biological analysis (PCA, clustering, etc).

Use when the user asks to "standardize single-cell data", "convert to h5ad", "convert Seurat to h5ad", "convert RDS to h5ad", "standardize scRNA-seq", "convert 10x to h5ad", "convert CSV/TSV expression matrix", "convert MTX files", "read Seurat object", "convert SingleCellExperiment", "harmonize single-cell metadata", or mentions converting any single-cell format (rds, mtx, csv, tsv, h5, hdf5, loom) into canonical h5ad. Do NOT use for reading/inspecting existing h5ad files (that is scrna-reader), gene ID conversion (that is stangene), or biological analysis (PCA, clustering, etc). Position in stan* family chain — Upstream: standl (consumes standl's raw/ + manifest.json + design.yaml). Downstream: stangene (produces canonical h5ad for gene identifier harmonization).