Ingest one or more academic sources (PDF, markdown, or plain text) into a personal research wiki. Handles PDF extraction automatically, conducts a focused conversation with the researcher before writing anything, then populates all relevant wiki directories (papers/, concepts/, models/, authors/) one section at a time. Use this skill whenever the user says "ingest", "process", "add this paper", or hands over a file path or PDF for inclusion in the wiki. Always read this skill before beginning any ingestion workflow.
Perform a full health-check of a research wiki: detect orphan pages, broken links, stale claims, missing concept pages, and data gaps. Suggest new sources to fill identified gaps. Use when the user says "lint the wiki", "health-check", "audit the wiki", "what's missing", "check my wiki", or asks for a wiki quality report. Always read this skill before starting a lint pass.
Answer a research question by consulting the personal wiki, synthesizing across pages, and producing a cited, cross-linked response. Use when the user asks any domain question, wants to understand a concept, compare models, or trace an idea through the literature — especially when they have an existing wiki. Also handles saving the answer as a new wiki page if the user wants to keep it. Trigger on: "what does the wiki say about", "explain", "compare", "how does X relate to Y", "summarize what we know about", or any open research question in the domain.
Produce a structured literature review on a research topic by synthesizing all relevant wiki pages and (optionally) supplementing with web search for recent work not yet ingested. Outputs a standalone review document suitable for use as a thesis chapter section, grant background, or conference paper related-work section. Use when the user asks to "write a review", "summarize the literature on", "produce a related work section", "give me a literature review about", or wants a comprehensive synthesis of a topic area. Always read this skill before starting a review.