bohrium-pdf-parser

name	bohrium-pdf-parser
description	Parse PDF documents via open.bohrium.com. Use when: user asks about extracting text, tables, charts, formulas, or molecules from PDF files on Bohrium, submitting PDFs by URL or file upload. NOT for: file management, dataset management, or knowledge base operations.

SKILL: Bohrium PDF Parser

Overview

Parse PDF documents using the open.bohrium.com PDF parsing service. Extract text, tables, charts, formulas, and molecular structures from PDFs. Two submission methods:

• URL submission — provide a PDF download link (e.g. arXiv link)
• File upload — upload a local PDF file

No CLI support — all operations use the HTTP API.

Authentication

BOHR_ACCESS_KEY is read from the OpenClaw config ~/.openclaw/openclaw.json:

"bohrium-pdf-parser": {
  "enabled": true,
  "apiKey": "YOUR_BOHR_ACCESS_KEY",
  "env": {
    "BOHR_ACCESS_KEY": "YOUR_BOHR_ACCESS_KEY"
  }
}

OpenClaw automatically injects env.BOHR_ACCESS_KEY into the runtime.

Common Code Template

import os, time, requests

AK = os.environ.get("BOHR_ACCESS_KEY", "")
BASE = "https://open.bohrium.com/openapi/v2/parse"
HEADERS = {"Authorization": f"Bearer {AK}"}
HEADERS_JSON = {**HEADERS, "Content-Type": "application/json"}

---

Parsing Workflow

1. Submit PDF (URL or file upload) → get token
2. Poll result with token → complete when status == "success"

Synchronous mode (sync=true) blocks until parsing completes but does not include content in the response — you still need get-result to retrieve it. Asynchronous mode (sync=false, default) requires polling get-result until status is success.

---

URL Submission

r = requests.post(f"{BASE}/trigger-url-async", headers=HEADERS_JSON, json={
    "url": "https://arxiv.org/pdf/2107.06922",
    "sync": False,
    "textual": True,
    "table": True,
    "molecule": True,
    "chart": True,
    "figure": False,
    "expression": True,
    "equation": True,
    "pages": [0],           # 0-indexed, omit to parse all pages
    "timeout": 1800
})
data = r.json()
token = data["token"]
print(f"Token: {token}, Status: {data['status']}")
# Token: 57d12c5a-..., Status: undefined

Response Fields:

Field	Description
token	Task identifier for querying results
status	Initial status is undefined
created_time	Creation time
time_dict	Per-stage timing (only download_pdf at this point)

---

File Upload

from pathlib import Path

pdf_path = Path("./paper.pdf")
with open(pdf_path, "rb") as f:
    r = requests.post(f"{BASE}/trigger-file-async",
        headers=HEADERS,       # No Content-Type; requests handles multipart automatically
        files={"file": (pdf_path.name, f, "application/pdf")},
        data={
            "sync": "false",
            "textual": "true",
            "table": "true",
            "molecule": "true",
            "chart": "true",
            "figure": "false",
            "expression": "true",
            "equation": "true",
            "pages": 0,         # multipart only accepts a single integer
            "timeout": 1800
        })
token = r.json()["token"]

Important: pages in multipart/form-data only accepts a single integer (e.g. 0), not a JSON array [0], or you'll get an int_parsing error. In JSON request bodies, arrays like [0, 1, 2] are supported.

---

Query Parse Result

r = requests.post(f"{BASE}/get-result", headers=HEADERS_JSON, json={
    "token": token,
    "content": True,        # Return extracted text
    "objects": False,        # Return extracted objects (tables, figures, etc.)
    "pages_dict": True       # Return per-page results
})
data = r.json()
print(f"Status: {data['status']}, Content length: {len(data.get('content', ''))}")

Response Fields:

Field	Description
status	success / undefined (processing) / failed
token	Task identifier
content	Extracted text (LaTeX markup format)
pages_dict	Per-page result dictionary
lang	Detected language (en / zh etc.)
proc_page / total_page	Processed / total pages
proc_textual / total_textual	Processed / total text blocks
proc_table / total_table	Processed / total tables
proc_mol / total_mol	Processed / total molecules
proc_equa / total_equa	Processed / total equations
time_dict	Per-stage timing details
cost	Cost

---

Full Async Polling Example

import os, time, requests

AK = os.environ.get("BOHR_ACCESS_KEY", "")
BASE = "https://open.bohrium.com/openapi/v2/parse"
HEADERS = {"Authorization": f"Bearer {AK}"}
HEADERS_JSON = {**HEADERS, "Content-Type": "application/json"}

# 1. Submit
r = requests.post(f"{BASE}/trigger-url-async", headers=HEADERS_JSON, json={
    "url": "https://arxiv.org/pdf/2107.06922",
    "sync": False,
    "textual": True, "table": True, "molecule": False,
    "chart": False, "figure": False,
    "expression": True, "equation": True,
    "pages": [0],
    "timeout": 1800
})
submit = r.json()
if submit.get("code"):
    print(f"Submit failed: {submit.get('message')}")
    exit(1)

token = submit["token"]
print(f"Submitted, token={token}")

# 2. Poll for result
for attempt in range(30):
    time.sleep(2)
    r = requests.post(f"{BASE}/get-result", headers=HEADERS_JSON, json={
        "token": token,
        "content": True,
        "objects": False,
        "pages_dict": False
    })
    result = r.json()
    status = result.get("status", "")
    print(f"  [{attempt+1}] status={status}")

    if status == "success":
        print(f"Done! Content length: {len(result.get('content', ''))}")
        print(f"Language: {result.get('lang')}, Cost: {result.get('cost')}")
        print(f"Preview: {result.get('content', '')[:200]}")
        break
    elif status == "failed":
        print(f"Failed: {result.get('description', 'unknown error')}")
        break
else:
    print("Timeout: task did not complete within 60 seconds")

---

Synchronous Mode Example

Synchronous mode (sync=true) blocks until parsing completes, so no polling is needed. However, the response does not include the content field — you still need to call get-result to retrieve the parsed content:

# 1. Synchronous submit — blocks until parsing completes
r = requests.post(f"{BASE}/trigger-url-async", headers=HEADERS_JSON, json={
    "url": "https://arxiv.org/pdf/2107.06922",
    "sync": True,           # Wait for completion
    "textual": True, "table": True,
    "molecule": False, "chart": False, "figure": False,
    "expression": True, "equation": True,
    "pages": [0],
    "timeout": 1800
})
submit = r.json()
token = submit["token"]
# submit["status"] == "success", but no content field

# 2. Retrieve content
r = requests.post(f"{BASE}/get-result", headers=HEADERS_JSON, json={
    "token": token,
    "content": True, "objects": False, "pages_dict": False
})
result = r.json()
print(f"Content: {result['content'][:200]}")

---

Parse Options Reference

Parameter	Type	Default	Description
sync	bool	false	true blocks until complete (still need get-result for content), false requires polling
textual	bool	-	Extract text content
table	bool	-	Extract tables
molecule	bool	-	Extract molecular structures
chart	bool	-	Extract charts
figure	bool	-	Extract figures/images
expression	bool	-	Extract math expressions
equation	bool	-	Extract equations
pages	list[int]	all	Pages to parse (0-indexed)
timeout	int	-	Timeout in seconds

---

curl Examples

AK="$BOHR_ACCESS_KEY"
BASE="https://open.bohrium.com/openapi/v2/parse"

# URL submission
curl -s -X POST "$BASE/trigger-url-async" \
  -H "Content-Type: application/json" \
  -H "Authorization: Bearer $AK" \
  -d '{"url":"https://arxiv.org/pdf/2107.06922","sync":false,"textual":true,"table":true,"molecule":false,"chart":false,"figure":false,"expression":true,"equation":true,"pages":[0],"timeout":1800}'

# File upload
curl -s -X POST "$BASE/trigger-file-async" \
  -H "Authorization: Bearer $AK" \
  -F "file=@paper.pdf" \
  -F "sync=false" -F "textual=true" -F "table=true" \
  -F "pages=0"

# Query result
curl -s -X POST "$BASE/get-result" \
  -H "Content-Type: application/json" \
  -H "Authorization: Bearer $AK" \
  -d '{"token":"YOUR_TOKEN","content":true,"objects":false,"pages_dict":true}'

---

Troubleshooting

Problem	Cause	Solution
AccessKey is required	Missing or incorrect auth	Use Authorization: Bearer $BOHR_ACCESS_KEY
int_parsing error	pages sent as JSON array in file upload	Use a single integer for pages in multipart form
status: undefined	Async task not yet complete	Poll get-result again; recommended interval: 2 seconds
Connection timeout	Domain/network issue	Use open.bohrium.com; test connectivity via curl -I https://open.bohrium.com/openapi
Content has LaTeX markup	Normal behavior	Results use \begin{title} etc. to mark structure; post-process to extract plain text
Large file parses slowly	Many pages or complex content	Use pages parameter to limit scope