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web-neuroimaging

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Mis à jour6 mai 2026 à 18:18

Web research for neuroimaging documentation, SimpleITK, nibabel, napari, BIDS specs, and neuroscience methods. TRIGGER when user asks to look up docs, find API references, or research neuroimaging methods.

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Métiers associésSOC

Basé sur la classification professionnelle SOC

Biologistes, autresSciences de la vie, physiques et sociales·SOC 19-1029

SKILL.md

readonly

name	web-neuroimaging
description	Web research for neuroimaging documentation, SimpleITK, nibabel, napari, BIDS specs, and neuroscience methods. TRIGGER when user asks to look up docs, find API references, or research neuroimaging methods.
user-invocable	false

Web Research for Neuroimaging

Priority Documentation Sources

Domain	URL	Use For
SimpleITK	simpleitk.readthedocs.io	Registration, filters, transforms
SimpleITK examples	simpleitk.org/SimpleITK-Notebooks	Jupyter notebooks with full pipelines
nibabel	nipy.org/nibabel	NIfTI I/O, affines, orientation
napari	napari.org/stable	Viewer API, layers, events
BIDS	bids-specification.readthedocs.io	Data format, iEEG extension
PySide6/Qt	doc.qt.io/qtforpython-6	Widget API, signals/slots
NumPy	numpy.org/doc/stable	Array operations
SciPy	docs.scipy.org/doc/scipy	Signal processing, ndimage

Search Strategy

Official docs first — use WebFetch on the URLs above
GitHub repos — SimpleITK/SimpleITK, nipy/nibabel, napari/napari
NeuroStars (neurostars.org) — neuroimaging-specific Q&A forum
PubMed/Scholar — methodology references, validation studies
Stack Overflow — general Python/Qt issues

Common Lookups

SimpleITK Registration

Registration method API: simpleitk.readthedocs.io/en/master/link_Registration_docs.html
Transform types: Euler3D, Affine, BSpline, Displacement
Metrics: MattesMutualInformation, Correlation, MeanSquares
Optimizers: GradientDescentLineSearch, LBFGSB, ConjugateGradient

nibabel

Affine handling: nipy.org/nibabel/coordinate_systems.html
Image types: Nifti1Image, Nifti2Image, MGHImage
Orientation codes: RAS, LAS, LPI, etc.

BIDS-iEEG Extension

Electrode files: *_electrodes.tsv with x,y,z,size,type columns
Coordinate systems: *_coordsystem.json specifying space (T1w, MNI152NLin2009aSym, etc.)
Channel files: *_channels.tsv with name,type,units,sampling_frequency

napari

Layer types: Image, Points, Shapes, Labels, Surface, Tracks, Vectors
Events: dims.events.current_step, mouse_drag_callbacks, mouse_move_callbacks
Rendering: mip, attenuated_mip, minip, translucent, iso

Version-Specific Notes

SimpleITK v2.x changed API significantly from v1.x — always check version
napari 0.5→0.6 had breaking changes in viewer embedding
PySide6 6.5+ required for latest Qt features
nibabel 5.0 deprecated some older image classes

When Reporting

Include direct URLs to relevant doc pages
Provide minimal code examples
Note any version-specific behavior
Flag deprecated APIs

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Web Research for Neuroimaging

Priority Documentation Sources

Domain

URL

Use For

SimpleITK

simpleitk.readthedocs.io

Registration, filters, transforms

SimpleITK examples

simpleitk.org/SimpleITK-Notebooks

Jupyter notebooks with full pipelines

nibabel

nipy.org/nibabel

NIfTI I/O, affines, orientation

napari

napari.org/stable

Viewer API, layers, events

BIDS

bids-specification.readthedocs.io

Data format, iEEG extension

PySide6/Qt

doc.qt.io/qtforpython-6

Widget API, signals/slots

NumPy

numpy.org/doc/stable

Array operations

SciPy

docs.scipy.org/doc/scipy

Signal processing, ndimage

Search Strategy

Official docs first — use WebFetch on the URLs above

GitHub repos — SimpleITK/SimpleITK, nipy/nibabel, napari/napari

NeuroStars (neurostars.org) — neuroimaging-specific Q&A forum

PubMed/Scholar — methodology references, validation studies

Stack Overflow — general Python/Qt issues

Common Lookups

SimpleITK Registration

Registration method API: simpleitk.readthedocs.io/en/master/link_Registration_docs.html

Transform types: Euler3D, Affine, BSpline, Displacement

Metrics: MattesMutualInformation, Correlation, MeanSquares

Optimizers: GradientDescentLineSearch, LBFGSB, ConjugateGradient

nibabel

Affine handling: nipy.org/nibabel/coordinate_systems.html

Image types: Nifti1Image, Nifti2Image, MGHImage

Orientation codes: RAS, LAS, LPI, etc.

BIDS-iEEG Extension

Electrode files: *_electrodes.tsv with x,y,z,size,type columns

Coordinate systems: *_coordsystem.json specifying space (T1w, MNI152NLin2009aSym, etc.)

Channel files: *_channels.tsv with name,type,units,sampling_frequency

napari

Layer types: Image, Points, Shapes, Labels, Surface, Tracks, Vectors

Events: dims.events.current_step, mouse_drag_callbacks, mouse_move_callbacks

Rendering: mip, attenuated_mip, minip, translucent, iso

Version-Specific Notes

SimpleITK v2.x changed API significantly from v1.x — always check version

napari 0.5→0.6 had breaking changes in viewer embedding

PySide6 6.5+ required for latest Qt features

nibabel 5.0 deprecated some older image classes

When Reporting

Include direct URLs to relevant doc pages

Provide minimal code examples

Note any version-specific behavior

Flag deprecated APIs