two-factor-authentication-best-practices

author	luo-kai
name	two-factor-authentication-best-practices
description	Configure TOTP authenticator apps, send OTP codes via email/SMS, manage backup codes, handle trusted devices, and implement 2FA sign-in flows using Better Auth's twoFactor plugin. Use when users need MFA, multi-factor authentication, authenticator setup, or login security with Better Auth.

Setup

1. Add twoFactor() plugin to server config with issuer
2. Add twoFactorClient() plugin to client config
3. Run npx @better-auth/cli migrate
4. Verify: check that twoFactorSecret column exists on user table

import { betterAuth } from "better-auth";
import { twoFactor } from "better-auth/plugins";

export const auth = betterAuth({
  appName: "My App",
  plugins: [
    twoFactor({
      issuer: "My App",
    }),
  ],
});

Client-Side Setup

import { createAuthClient } from "better-auth/client";
import { twoFactorClient } from "better-auth/client/plugins";

export const authClient = createAuthClient({
  plugins: [
    twoFactorClient({
      onTwoFactorRedirect() {
        window.location.href = "/2fa";
      },
    }),
  ],
});

Enabling 2FA for Users

Requires password verification. Returns TOTP URI (for QR code) and backup codes.

const enable2FA = async (password: string) => {
  const { data, error } = await authClient.twoFactor.enable({
    password,
  });

  if (data) {
    // data.totpURI — generate a QR code from this
    // data.backupCodes — display to user
  }
};

twoFactorEnabled is not set to true until first TOTP verification succeeds. Override with skipVerificationOnEnable: true (not recommended).

TOTP (Authenticator App)

Displaying the QR Code

import QRCode from "react-qr-code";

const TotpSetup = ({ totpURI }: { totpURI: string }) => {
  return <QRCode value={totpURI} />;
};

Verifying TOTP Codes

Accepts codes from one period before/after current time:

const verifyTotp = async (code: string) => {
  const { data, error } = await authClient.twoFactor.verifyTotp({
    code,
    trustDevice: true,
  });
};

TOTP Configuration Options

twoFactor({
  totpOptions: {
    digits: 6, // 6 or 8 digits (default: 6)
    period: 30, // Code validity period in seconds (default: 30)
  },
});

OTP (Email/SMS)

Configuring OTP Delivery

import { betterAuth } from "better-auth";
import { twoFactor } from "better-auth/plugins";
import { sendEmail } from "./email";

export const auth = betterAuth({
  plugins: [
    twoFactor({
      otpOptions: {
        sendOTP: async ({ user, otp }, ctx) => {
          await sendEmail({
            to: user.email,
            subject: "Your verification code",
            text: `Your code is: ${otp}`,
          });
        },
        period: 5, // Code validity in minutes (default: 3)
        digits: 6, // Number of digits (default: 6)
        allowedAttempts: 5, // Max verification attempts (default: 5)
      },
    }),
  ],
});

Sending and Verifying OTP

Send: authClient.twoFactor.sendOtp(). Verify: authClient.twoFactor.verifyOtp({ code, trustDevice: true }).

OTP Storage Security

Configure how OTP codes are stored in the database:

twoFactor({
  otpOptions: {
    storeOTP: "encrypted", // Options: "plain", "encrypted", "hashed"
  },
});

For custom encryption:

twoFactor({
  otpOptions: {
    storeOTP: {
      encrypt: async (token) => myEncrypt(token),
      decrypt: async (token) => myDecrypt(token),
    },
  },
});

Backup Codes

Generated automatically when 2FA is enabled. Each code is single-use.

Displaying Backup Codes

const BackupCodes = ({ codes }: { codes: string[] }) => {
  return (
    <div>
      <p>Save these codes in a secure location:</p>
      <ul>
        {codes.map((code, i) => (
          <li key={i}>{code}</li>
        ))}
      </ul>
    </div>
  );
};

Regenerating Backup Codes

Invalidates all previous codes:

const regenerateBackupCodes = async (password: string) => {
  const { data, error } = await authClient.twoFactor.generateBackupCodes({
    password,
  });
  // data.backupCodes contains the new codes
};

Using Backup Codes for Recovery

const verifyBackupCode = async (code: string) => {
  const { data, error } = await authClient.twoFactor.verifyBackupCode({
    code,
    trustDevice: true,
  });
};

Backup Code Configuration

twoFactor({
  backupCodeOptions: {
    amount: 10, // Number of codes to generate (default: 10)
    length: 10, // Length of each code (default: 10)
    storeBackupCodes: "encrypted", // Options: "plain", "encrypted"
  },
});

Handling 2FA During Sign-In

Response includes twoFactorRedirect: true when 2FA is required:

Sign-In Flow

1. Call signIn.email({ email, password })
2. Check context.data.twoFactorRedirect in onSuccess
3. If true, redirect to /2fa verification page
4. Verify via TOTP, OTP, or backup code
5. Session cookie is created on successful verification

const signIn = async (email: string, password: string) => {
  const { data, error } = await authClient.signIn.email(
    { email, password },
    {
      onSuccess(context) {
        if (context.data.twoFactorRedirect) {
          window.location.href = "/2fa";
        }
      },
    }
  );
};

Server-side: check "twoFactorRedirect" in response when using auth.api.signInEmail.

Trusted Devices

Pass trustDevice: true when verifying. Default trust duration: 30 days (trustDeviceMaxAge). Refreshes on each sign-in.

Security Considerations

Session Management

Flow: credentials → session removed → temporary 2FA cookie (10 min default) → verify → session created.

twoFactor({
  twoFactorCookieMaxAge: 600, // 10 minutes in seconds (default)
});

Rate Limiting

Built-in: 3 requests per 10 seconds for all 2FA endpoints. OTP has additional attempt limiting:

twoFactor({
  otpOptions: {
    allowedAttempts: 5, // Max attempts per OTP code (default: 5)
  },
});

Encryption at Rest

TOTP secrets: encrypted with auth secret. Backup codes: encrypted by default. OTP: configurable ("plain", "encrypted", "hashed"). Uses constant-time comparison for verification.

2FA can only be enabled for credential (email/password) accounts.

Disabling 2FA

Requires password confirmation. Revokes trusted device records:

const disable2FA = async (password: string) => {
  const { data, error } = await authClient.twoFactor.disable({
    password,
  });
};

Complete Configuration Example

import { betterAuth } from "better-auth";
import { twoFactor } from "better-auth/plugins";
import { sendEmail } from "./email";

export const auth = betterAuth({
  appName: "My App",
  plugins: [
    twoFactor({
      // TOTP settings
      issuer: "My App",
      totpOptions: {
        digits: 6,
        period: 30,
      },
      // OTP settings
      otpOptions: {
        sendOTP: async ({ user, otp }) => {
          await sendEmail({
            to: user.email,
            subject: "Your verification code",
            text: `Your code is: ${otp}`,
          });
        },
        period: 5,
        allowedAttempts: 5,
        storeOTP: "encrypted",
      },
      // Backup code settings
      backupCodeOptions: {
        amount: 10,
        length: 10,
        storeBackupCodes: "encrypted",
      },
      // Session settings
      twoFactorCookieMaxAge: 600, // 10 minutes
      trustDeviceMaxAge: 30 * 24 * 60 * 60, // 30 days
    }),
  ],
});