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How to load krewlyzer parquet feature files with correct suffixes and schemas per feature type.
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| name | parquet-feature-loading |
| description | How to load krewlyzer parquet feature files with correct suffixes and schemas per feature type. |
from kreview.core import load_sample_feature
# Load a feature parquet for one sample
df = load_sample_feature(
sample_id="P-0000280-T02-XS1",
feature_suffix=".FSC.gene.parquet", # exact suffix from §4 table
results_dir="/path/to/results/",
)
| Evaluator | source_file |
|---|---|
| FSC.gene | .FSC.gene.parquet |
| FSC bin-level | .FSC.ontarget.parquet |
| FSC.regions | .FSC.regions.parquet |
| FSD | .FSD.ontarget.parquet |
| FSR | .FSR.ontarget.parquet |
| OCF ontarget | .OCF.ontarget.parquet |
| OCF offtarget | .OCF.offtarget.parquet |
| ATAC | .ATAC.ontarget.parquet |
| TFBS | .TFBS.ontarget.parquet |
| MDS | .MDS.ontarget.parquet |
| MDS.gene | .MDS.gene.parquet |
| MDS.exon | .MDS.exon.parquet |
| EndMotif | .EndMotif.ontarget.parquet |
| BreakPointMotif | .BreakPointMotif.ontarget.parquet |
| EndMotif1mer | .EndMotif1mer.parquet |
| WPS.panel | .WPS.panel.parquet |
| WPS genome | .WPS.parquet |
| WPS background | .WPS_background.parquet |
| metadata | .metadata.parquet |
.tsv.gz or .features.jsonload_sample_feature().correction_factors.parquet or .fsc_counts.parquet (excluded)