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apt-setup

Étoiles7

Forks5

Mis à jour17 mars 2026 à 18:24

Initialize a MATLAB session for atom probe analysis. Run this at the start of every APT session to set up the toolbox, load isotope tables, and load the default color scheme.

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Source

peterfelfer

peterfelfer/Atom-Probe-Toolbox

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Métiers associésSOC

Basé sur la classification professionnelle SOC

Développeurs de logicielsProfessions informatiques et mathématiques·SOC 15-1252

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name	apt-setup
description	Initialize a MATLAB session for atom probe analysis. Run this at the start of every APT session to set up the toolbox, load isotope tables, and load the default color scheme.
argument-hint	[instrument]

Initialize the MATLAB session for atom probe analysis. Use the MATLAB MCP server to execute the following setup code:

setupToolbox;
load('isotopeTable_naturalAbundances.mat');
load('colorScheme_default.mat');
cfg = APTConfig.getInstance();

If the user provided an instrument name as $ARGUMENTS, also apply the instrument preset. Map common names to preset names:

"LEAP 4000", "4000", "LEAP4000" → cfg.applyInstrumentPreset('LEAP4000XHR')
"LEAP 5000 XR", "5000XR", "LEAP5000XR" → cfg.applyInstrumentPreset('LEAP5000XR')
"LEAP 5000 XS", "5000XS", "LEAP5000XS" → cfg.applyInstrumentPreset('LEAP5000XS')
"EIKOS", "eikos" → cfg.applyInstrumentPreset('EIKOS')

If no instrument is provided, ask the user which instrument their data was acquired on.

After setup, display the current configuration:

cfg.display();

Report back to the user what was initialized and the active instrument settings (detection efficiency, flight path, t0).