second-brain-template

Use when user says "export [[Note]] ...", "export

Use when user says "import <file.zip>", "zaimportuj paczkę", "import bundle/pack of notes". Imports a brain-pack zip (made by /export in another brain) into this vault - validates, triages collisions, places notes into this vault's taxonomy, stamps provenance, updates all 3 indexes, writes a report. At most 2 user prompts per run.

Use when user says "ingest", "process inbox", "przetworz nowe pliki", or when files appear in `content/_raw/inbox/`. Processes raw sources into wiki notes, handles intra-batch clustering with confirmation, updates all 3 indexes.

Use when user says "lint", "health check", "audit". Checks vault for missing frontmatter, broken wikilinks, orphans, stub notes, inconsistent tags, TODO markers, stale content; saves report to `_outputs/reports/`.

Use when user says "research X", "what do my notes say about X", "co mam w notatkach o X". Synthesizes an answer from the vault citing wikilinks; offers to save substantial answers to `_outputs/answers/`.

Read research outline, launch independent agent for each item for deep research. Disable task output.

Conduct preliminary research on a topic and generate research outline. For academic research, benchmark research, technology selection, etc.

Use when user says "curate", "prune", "cleanup the vault", "retire stale notes", "wyczyść bazę". Scores notes for staleness/isolation/dead-links/duplication, writes a triage report, and on confirmation moves retired notes to _graveyard/.

Use when user says "reindex", "update indexes", "rebuild indexes", "odśwież indeksy", or when an index file is missing/stale. Full rebuild of `_indexes/vault-map.md`, `catalog.md`, `graph.md` from all wiki notes.

Use when the user says "find gaps", "what's missing", "coverage analysis", "where is my vault thin". Surfaces weakly-connected notes, topics implied but never written, and stale clusters — an actionable to-build map.

Use when the user says "rename note", "move note", "merge notes", "split note", or "refactor [[Note]]". Renames, moves, merges, or splits notes while repairing every wikilink and rebuilding the indexes.

Use when user says "compile X", "write article about X", "napisz artykuł o X". Synthesizes a new wiki article from existing notes on a topic, citing them as wikilinks, type `compiled-note`.

Use when user says "enhance [[Note]]", "improve X", "popraw notatkę X". Reads the note, fills gaps from related notes, adds bidirectional wikilinks, sets `agent-reviewed:` date, preserves all existing user-authored content.

Create Excalidraw diagram JSON files that make visual arguments. Use when the user wants to visualize workflows, architectures, or concepts.

Use when starting a fresh knowledge base from this template, or when the user says "onboard", "set up my KB", "initialize", "rozpocznij". Interviews the user, personalizes the brain (CLAUDE.md, WRITING_STYLE.md, AGENTS.md), scaffolds topic folders, and builds the indexes.

Use when user says "generate report about X", "create summary of X", "stwórz podsumowanie X". Generates a requested format (summary, reading list, topic map, timeline) and saves to `_outputs/` or topic folder.

Add field definitions to existing research outline.

Add items (research objects) to existing research outline.

Summarize deep research results into markdown report, cover all fields, skip uncertain values.