regulatory-region-analysis

Regulatory Region Analysis - Analyze regulatory regions: get overlapping features, binding matrix, sequence, and phenotype associations. Use this skill for epigenomics tasks involving get overlap region get species binding matrix get sequence get phenotype region. Combines 4 tools from 2 SCP server(s).

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Dépôt: SpectrAI-Initiative/InnoClaw
Dernière activité de la source: 1 avril 2026 à 17:03
Langue détectée de SKILL.md: anglais
Étoiles: 390
Forks: 28

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npx skills add https://github.com/SpectrAI-Initiative/InnoClaw --skill regulatory-region-analysis

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name	regulatory_region_analysis
description	Regulatory Region Analysis - Analyze regulatory regions: get overlapping features, binding matrix, sequence, and phenotype associations. Use this skill for epigenomics tasks involving get overlap region get species binding matrix get sequence get phenotype region. Combines 4 tools from 2 SCP server(s).

Regulatory Region Analysis

Discipline: Epigenomics | Tools Used: 4 | Servers: 2

Description

Analyze regulatory regions: get overlapping features, binding matrix, sequence, and phenotype associations.

Tools Used

get_overlap_region from ensembl-server (streamable-http) - https://scp.intern-ai.org.cn/api/v1/mcp/12/Origene-Ensembl
get_species_binding_matrix from ensembl-server (streamable-http) - https://scp.intern-ai.org.cn/api/v1/mcp/12/Origene-Ensembl
get_sequence from ucsc-server (streamable-http) - https://scp.intern-ai.org.cn/api/v1/mcp/13/Origene-UCSC
get_phenotype_region from ensembl-server (streamable-http) - https://scp.intern-ai.org.cn/api/v1/mcp/12/Origene-Ensembl

Workflow

Get overlapping regulatory features
Get transcription factor binding
Retrieve DNA sequence
Check phenotype associations

Test Case

Input

{
    "region":

import asyncio import json from contextlib import AsyncExitStack from mcp import ClientSession from mcp.client.streamable_http import streamablehttp_client from mcp.client.sse import sse_client SERVERS = { "ensembl-server": "https://scp.intern-ai.org.cn/api/v1/mcp/12/Origene-Ensembl", "ucsc-server": "https://scp.intern-ai.org.cn/api/v1/mcp/13/Origene-UCSC" } async def connect(url, stack): transport = streamablehttp_client(url=url, headers={"SCP-HUB-API-KEY": "sk-b04409a1-b32b-4511-9aeb-22980abdc05c"}) read, write, _ = await stack.enter_async_context(transport) ctx = ClientSession(read, write) session = await stack.enter_async_context(ctx) await session.initialize() return session def parse(result): try: if hasattr(result, 'content') and result.content: c = result.content[0] if hasattr(c, 'text'): try: return json.loads(c.text) except: return c.text return str(result) except: return str(result) async def main(): async with AsyncExitStack() as stack: # Connect to required servers sessions = {} sessions["ensembl-server"] = await connect("https://scp.intern-ai.org.cn/api/v1/mcp/12/Origene-Ensembl", stack) sessions["ucsc-server"] = await connect("https://scp.intern-ai.org.cn/api/v1/mcp/13/Origene-UCSC", stack) # Execute workflow steps # Step 1: Get overlapping regulatory features result_1 = await sessions["ensembl-server"].call_tool("get_overlap_region", arguments={}) data_1 = parse(result_1) print(f"Step 1 result: {json.dumps(data_1, indent=2, ensure_ascii=False)[:500]}") # Step 2: Get transcription factor binding result_2 = await sessions["ensembl-server"].call_tool("get_species_binding_matrix", arguments={}) data_2 = parse(result_2) print(f"Step 2 result: {json.dumps(data_2, indent=2, ensure_ascii=False)[:500]}") # Step 3: Retrieve DNA sequence result_3 = await sessions["ucsc-server"].call_tool("get_sequence", arguments={}) data_3 = parse(result_3) print(f"Step 3 result: {json.dumps(data_3, indent=2, ensure_ascii=False)[:500]}") # Step 4: Check phenotype associations result_4 = await sessions["ensembl-server"].call_tool("get_phenotype_region", arguments={}) data_4 = parse(result_4) print(f"Step 4 result: {json.dumps(data_4, indent=2, ensure_ascii=False)[:500]}") # Cleanup print("Workflow complete!") if __name__ == "__main__": asyncio.run(main())

regulatory-region-analysis

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Regulatory Region Analysis

Description

Tools Used

Workflow

Test Case

Input

Regulatory Region Analysis

Description

Tools Used

Workflow

Test Case

Input

Expected Steps

Usage Example

regulatory-region-analysis

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Regulatory Region Analysis

Description

Tools Used

Workflow

Test Case

Input

Regulatory Region Analysis

Description

Tools Used

Workflow

Test Case

Input

Expected Steps

Usage Example