repo-cleanup-common-hidden-folders

name	repo-cleanup-common-hidden-folders
description	Sub-skill of repo-cleanup: Common Hidden Folders (+2).
version	2.2.0
category	_internal
type	reference
scripts_exempt	true

Common Hidden Folders (+2)

Common Hidden Folders

Folder	Description	Action
.agent-os/	Legacy agent OS framework	Consolidate to .claude/
.ai/	Legacy AI configuration	Consolidate to .claude/
.agent-runtime/	Runtime symlinks (often dead)	Delete if dead links
.common/	Orphaned utility scripts	Delete or relocate to scripts/
.specify/	Stale specification templates	Delete if unused
.drcode/	External tool config (Dr. Code)	Keep if actively used
.slash-commands/	Command registry	Keep

Discovery Commands

# List all hidden directories with sizes
du -sh .*/ 2>/dev/null | grep -v "^\./\.git"

# Find dead symlinks in hidden folders
find .agent-runtime -type l ! -exec test -e {} \; -print 2>/dev/null

# Count files in each hidden directory
for dir in .claude .agent-os .ai .common .specify; do
  if [ -d "$dir" ]; then
    count=$(find "$dir" -type f | wc -l)
    echo "$dir: $count files"
  fi
done

Cleanup Commands

# Remove dead symlink directories
rm -rf .agent-runtime/

# Remove stale template directories
rm -rf .specify/

# Remove orphaned utilities (after relocating useful scripts)
rm -rf .common/


*See sub-skills for full details.*