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Fetch and analyze AlphaFold-predicted protein structures from the AlphaFold DB or EBI.
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Basé sur la classification professionnelle SOC
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| name | alphafold-fetch |
| description | Fetch and analyze AlphaFold-predicted protein structures from the AlphaFold DB or EBI. |
Retrieve and evaluate AlphaFold structures for target proteins.
| Command | Description |
|---|---|
web_search "site:alphafold.ebi.ac.uk <uniprot-id>" | AlphaFold DB entry |
web_search "AlphaFold <protein-name> structure" | Search for structure |
90: very high confidence (backbone correct)
# AlphaFold Structure: [protein]
## UniProt ID: ...
## pLDDT Distribution
| Domain/Region | Residues | Mean pLDDT | Confidence |
## Structural Features
- Domains
- Disordered regions
- Known binding sites
- Comparison with PDB structures
## Recommendations
- Suitability for docking
- Suitability for MD simulation
- Regions requiring experimental validation
Save to outputs/alphafold-<slug>.md.