GAgent

Phage genomics specialist for bacteriophage genome analysis, taxonomy classification, lifecycle prediction, anti-CRISPR detection, and PhageScope dataset workflows. Use for phage diversity studies, host prediction, comparative genomics, and phylogenetic analysis of bacteriophages.

Bioinformatics data interpretation skill for genomics, proteomics, metagenomics, and phage analysis. Covers sequence analysis, annotation, assembly quality, phylogenetics, and functional profiling. Use when analyzing biological data, interpreting experimental results, or explaining bioinformatics outputs.

Route bioinformatics intents to verified bio_tools operations, prioritizing PASS cases from bio_tools_test_matrix.json. Trigger on FASTA/FASTQ/SAM/BAM requests, assembly, alignment, annotation, taxonomy, phage, or workflow execution tasks.

Execution playbook for bio_tools remote mode, with reusable request templates and I/O conventions. Trigger when agent needs concrete payloads for tool_name/operation/params.

Troubleshooting skill for bio_tools failures in remote execution mode. Trigger on permission/path/database/parameter/runtime errors and provide deterministic retry sequences.

Scientific report and manuscript writing skill for research documentation. Covers Nature-level methodology writing, results interpretation, figure descriptions, and academic prose. Use when generating analysis reports, writing manuscripts, documenting experiments, or creating scientific documentation.

Data visualization skill for scientific figures using matplotlib/seaborn/plotly. Covers distribution, comparison, relationship, time series, and bioinformatics-specific charts (Circos, phylogenetic trees, heatmaps). Enforces publication-quality standards, English-only text, and proper file saving.

Comprehensive spreadsheet creation, editing, and analysis with support for formulas, formatting, data analysis, and visualization. When Claude needs to work with spreadsheets (.xlsx, .xlsm, .csv, .tsv, etc) for: (1) Creating new spreadsheets with formulas and formatting, (2) Reading or analyzing data, (3) Modify existing spreadsheets while preserving formulas, (4) Data analysis and visualization in spreadsheets, or (5) Recalculating formulas