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Fetch and summarize a PubMed article by PMID (abstract, key methods, key findings).
Codex または Claude でインストール この Prompt をコピーして Codex、Claude、または他のアシスタントに貼り付けると、Skill ページを確認してインストールできます。
Manage the BioAPEX current-feature workflow from scoping through review and completion
Turn an analysis request into a Slurm-ready execution plan with commands, resource assumptions, and job structure.
Scale a buffer recipe to a target volume and compute component masses/volumes.
Save a fetched summary or document to the knowledge base for later retrieval (e.g. after PubMed/UniProt lookup).
Interpret scRNA clusters using marker genes and suggest cell type or state.
Critically evaluate a perturbation hypothesis — challenge assumptions, propose negative controls, and flag confounders.
SOC 職業分類に基づく
| name | pubmed_fetch_abstract |
| description | Fetch and summarize a PubMed article by PMID (abstract, key methods, key findings). |
| category | bio/literature |
| version | 1 |
| requires_tools | ["fetch_url"] |
| requires_network | true |
| user_invocable | true |
| species | any |
| modality | literature |
| stage | utilities |
| stability | experimental |
| safety_level | low |
User provides a PMID or asks for the abstract/summary of a specific paper.
Fetch: Use fetch_url with:
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=pubmed&id={pmid}&retmode=xml or rettype=abstractParse: Extract title, authors, journal, year, abstract text from XML/response.
Summarize: Provide:
Link: Include https://pubmed.ncbi.nlm.nih.gov/{pmid}/.