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Generate an sbatch script template for GPU or CPU jobs (Slurm).
Codex または Claude でインストール この Prompt をコピーして Codex、Claude、または他のアシスタントに貼り付けると、Skill ページを確認してインストールできます。
Manage the BioAPEX current-feature workflow from scoping through review and completion
Turn an analysis request into a Slurm-ready execution plan with commands, resource assumptions, and job structure.
Scale a buffer recipe to a target volume and compute component masses/volumes.
Save a fetched summary or document to the knowledge base for later retrieval (e.g. after PubMed/UniProt lookup).
Interpret scRNA clusters using marker genes and suggest cell type or state.
Critically evaluate a perturbation hypothesis — challenge assumptions, propose negative controls, and flag confounders.
SOC 職業分類に基づく
| name | slurm_job_template |
| description | Generate an sbatch script template for GPU or CPU jobs (Slurm). |
| category | bio/compute |
| version | 1 |
| requires_tools | ["python_repl","write_file"] |
| requires_network | false |
| user_invocable | true |
| species | any |
| modality | compute |
| stage | utilities |
| stability | experimental |
| safety_level | medium |
User needs a Slurm sbatch script for a compute job (e.g. Python, R, nextflow) with GPU or CPU.
Gather: Get job name, partition/qos if known, GPU count, CPU count, memory, time, and main command.
Template: Use python_repl to build sbatch lines:
Output: Print the full script. Optionally use write_file to save under knowledge/ or user-specified path if they ask.
Remind: Note that they should edit paths and commands before submitting.
