aws-healthomics-skill

Create, migrate, run, debug and optimize genomics workflows in AWS HealthOmics. Use when working with bioinformatics pipelines supporting WDL, Nextflow, or CWL languages. Triggers: creating new genomics/bioinformatics workflows, migrating Cromwell/on-premises WDL pipelines, running and monitoring workflow executions, debugging failed runs, optimizing performance, setting up ECR pull-through caches, integrating from Git repos, or searching for genomics files. Keywords: healthomics, WDL, CWL, Nextflow, workflow, genomics, bioinformatics, pipeline, RNA-seq, DNA-seq, variant calling, scRNA-seq, omics.