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Calculate protein parameters such as molecular weight, pI, extinction coefficient, and basic purification recommendations. Use when the user asks about protein properties or planning purification from sequence.
Codex または Claude でインストール この Prompt をコピーして Codex、Claude、または他のアシスタントに貼り付けると、Skill ページを確認してインストールできます。
SOC 職業分類に基づく
Generate AKTA or UNICORN chromatograms from uploaded .res or .zip files with PyCORN, export csv or xlsx traces, and attach the results to BenchOS entries or registry items. Use when the user provides a chromatogram export file and wants plots, extracted data, or BenchOS-linked results.
Assemble BenchOS demo multi-insert multi-insert constructs, compute HiFi assembly reaction volumes, and export the final assembled sequence. Use when the user wants a BenchOS CLI or agent-driven version of the BigBac Assembler tool.
Calculate BenchOS buffer recipes from preset or custom stock-solution inputs and export the resulting recipe. Use when the user wants a BenchOS CLI or agent-driven version of the Buffer Calculator tool.
BenchOS CLI command reference for workspace, memory, API, and skill-management operations. Use when generating, reviewing, or troubleshooting benchos-cli command usage.
Decision trees and workflows for molecular cloning in structural biology labs. Use when the user asks about LIC vs Gibson, construct design, tag strategy, codon optimization planning, multi-subunit assembly, or clone verification workflow.
Codon optimize DNA or protein sequences for expression using the BenchOS-managed IDT integration. Use when the user asks to codon optimize for insect, E. coli, mammalian, yeast, or vector-specific expression.
| name | benchos-protparam |
| description | Calculate protein parameters such as molecular weight, pI, extinction coefficient, and basic purification recommendations. Use when the user asks about protein properties or planning purification from sequence. |
| license | Proprietary |
| compatibility | Requires BenchOS agent runtime with `labbook_cli`, `benchos-cli`, and the curated `python-basic` capability pack. |
| metadata | {"author":"benchos","version":"1"} |
| allowed-tools | labbook_cli |
Use this skill when the user wants protein biophysical parameters from an amino acid sequence.
python-basic before running the script.--purification when the user also wants a simple purification plan.{"args":["capabilities","install","--name","python-basic"]}
{"args":["exec","--capability","python-basic","--cwd",".","--","/opt/benchos/shared-skills/benchos-protparam/scripts/protparam_cli.py","--sequence","MKTAYIAKQRQISFVKSHFSRQDILD","--json"]}
{"args":["exec","--capability","python-basic","--cwd",".","--","/opt/benchos/shared-skills/benchos-protparam/scripts/protparam_cli.py","--sequence","MKTAYIAKQRQISFVKSHFSRQDILD","--purification","--json"]}