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Search and retrieve scientific literature. Use when asked to find papers, research a topic, find citations, get paper abstracts, or conduct literature reviews. Accesses Semantic Scholar, arXiv, and other academic databases.
Codex または Claude でインストール この Prompt をコピーして Codex、Claude、または他のアシスタントに貼り付けると、Skill ページを確認してインストールできます。
SOC 職業分類に基づく
Get fully up to date on a project, or build its weekly / PI-meeting update bundle, from INSIDE the project directory. Use when an agent lands cold in a project and needs the current state (open workstreams, what moved, open PI decisions, blockers), or when asked to "build the weekly update", "prep the PI meeting", or "aggregate the relevant files into the update dir". Mines only THIS repo, driven by its own .sync/manifest.yaml. No dependency on LabSync.
Run Quantum ESPRESSO DFT calculations. Use when asked to perform first-principles calculations, SCF, structural relaxation, band structure, DOS, phonons, or any ab initio quantum mechanical calculation.
Decide where and how to run compute jobs across available backends (HPC, cloud GPUs, local). Use when starting any compute-intensive task, choosing a backend or partition, deciding job parameters (walltime, GPU type, parallelism), or debugging compute infrastructure issues. Embeds the smoke-first iteration pattern — validate cheaply before scaling.
Orchestrate one or more long-running compute campaigns (HPC simulations, multi-stage MD pipelines, ensemble runs) where stages take hours to days and failures must not halt the pipeline. Use when running multiple parallel campaigns that share a stage structure (smoke → equilibration → production → analysis), when waiting on long jobs makes interactive driving impractical, or when designing a self-healing tick-based supervisor for compute work. Reads/writes per-campaign WORKFLOW.md files as durable state.
Analyze simulation data and compute properties. Use when asked to parse LAMMPS/QE output, calculate diffusion coefficients, RDF, MSD, energies, or generate plots and visualizations.
Generate candidate crystal structures from a chemical formula and assess their stability using ggen. Use when you need trial structures for a composition with no known experimental structure, or want stability-ranked polymorph candidates before running MD/DFT.
| name | literature-search |
| description | Search and retrieve scientific literature. Use when asked to find papers, research a topic, find citations, get paper abstracts, or conduct literature reviews. Accesses Semantic Scholar, arXiv, and other academic databases. |
| allowed-tools | ["Read","Write","Bash","WebSearch","WebFetch"] |
You are conducting scientific literature searches and reviews.
When researching a topic:
When looking for a specific paper:
The Semantic Scholar MCP server provides:
Example queries:
Search for papers on "CO2 adsorption in MOFs"
Find recent papers by Author Name about topic
Get citations for paper with ID xxx
For broader searches:
Search for "metal-organic framework CO2 capture" site:nature.com
Search for "LAMMPS force field" filetype:pdf
curl "https://api.semanticscholar.org/graph/v1/paper/search?query=machine+learning+materials&limit=10"
curl "http://export.arxiv.org/api/query?search_query=all:materials+science&max_results=10"
Define Scope
Initial Search
Screen Results
Deep Dive
Synthesize
From papers, extract:
Use consistent format:
Author1, Author2, et al. "Title." Journal Volume, Pages (Year). DOI: xxx
Save literature search results to:
workspaces/project-name/literature/
├── search-results.md # Summary of search
├── key-papers.md # Annotated bibliography
├── extracted-parameters.md # Force field params, etc.
└── pdfs/ # Downloaded papers (if permitted)
For downloading papers or supplementary info:
Use playwright to navigate to [URL] and download the PDF
Note: Respect copyright and access restrictions.