zotero-obsidian-codex-workflow

name	zotero-obsidian-codex-workflow
description	Unified entrypoint for this repository. Use when the user wants one-step bootstrap, Codex skill installation, Windows setup, or daily literature work in this Zotero-Obsidian-Codex workflow.

Zotero Obsidian Codex Workflow

Use this as the single entrypoint for the repository.

What This Skill Does

• At the repo root:
  • verify the Windows setup state
  • install a global Codex skill copy when requested
  • apply the repo-standard Obsidian and Zotero Integration configuration
• Inside Research vault/:
  • route daily literature work to $literature-processor

Preferred Commands

Install the global Codex skill and initialize the current clone:

python .agents/skills/zotero-obsidian-codex-workflow/scripts/bootstrap_windows.py

Preview only:

python .agents/skills/zotero-obsidian-codex-workflow/scripts/bootstrap_windows.py --dry-run

Install only the global Codex skill:

python .agents/skills/zotero-obsidian-codex-workflow/scripts/bootstrap_windows.py --install-skill-only

Routing

1. If the current workspace contains .obsidian/ and Research vault/, treat it as the repo root.
2. Run the readiness check first.
3. If setup files are missing, apply the setup automatically unless the user explicitly asked for preview only.
4. If the current workspace is Research vault/, switch to $literature-processor behavior for day-to-day work.

Output Expectations

• Always report whether the global Codex skill was installed.
• Always report whether the repo vault config was checked or applied.
• If a desktop prerequisite is missing, name the exact missing item and stop before pretending setup succeeded.