メニュー
Use when working in SIMPLE's src/main/nano subsystem, including nanoparticle and molecule data structures, graphene and time-series helpers, and the SINGLE-specific domain logic that supports liquid-cell and nanoparticle workflows.
Codex または Claude でインストール この Prompt をコピーして Codex、Claude、または他のアシスタントに貼り付けると、Skill ページを確認してインストールできます。
SOC 職業分類に基づく
Use when working on SIMPLE's abinitio2D workflow and its cluster2D stages, including 2D search strategies, probabilistic 2D sampling, class-average restoration, distributed partial class-average assembly, online matcher particle I/O, project updates, and streaming/rejection helpers.
Use when working on SIMPLE's model_cavgs_rejection application, simple_cavg_quality feature-space selector, class-average quality selection, quality_mode=analyze outputs, cavgs_quality feature/reference tables, chunk vs pool rejection tuning, or microchunk quality-vector integration.
Use when studying, explaining, or modifying SIMPLE's fractional-update and trailing-reconstruction workflow, including update_frac sampling, sampled/updatecnt bookkeeping, matcher reconstruction I/O, partial even/odd reconstruction handoff, rec3D/volassemble ownership, downsampling compatibility, obsfield mirrors, and stage-to-stage previous-reference contracts.
Use when working in SIMPLE's src/main/stream subsystem, including online/mini-stream orchestration, chunk and microchunk processing, staged pipeline steps, watchers, queue/message definitions, and streaming variants of preprocessing and cluster2D workflows.
Use when working on SIMPLE's streaming microchunk class-average rejection, simple_microchunked2D lifecycle sentinels, pass-1/pass-2/refchunk/match generation, skip_pass_2 behavior, simple_cluster2D_rejector criteria, or boundaries with model_cavgs_rejection.
Use when working on SIMPLE's refine3D workflow, including CLI/UI entrypoints, commanders, probabilistic pre-alignment, 3D search and matcher strategies, online partial reconstruction, volassemble, automasking, nonuniform filtering, multi-state behavior, distributed execution, and related abinitio3D refinement code paths.
| name | simple-main-nano |
| description | Use when working in SIMPLE's src/main/nano subsystem, including nanoparticle and molecule data structures, graphene and time-series helpers, and the SINGLE-specific domain logic that supports liquid-cell and nanoparticle workflows. |
src/main/nanoThis is the nanoparticle/SINGLE domain folder.
simple_nanoparticle.f90simple_nanoparticle_utils.f90simple_atoms.f90simple_molecule_data.f90single_tseries_tracker.f90single_tseries_extractor.f90single/ commanders and ui/singleimage/, volume/, and time-series workflowsExpect nanoparticle-specific assumptions here that do not generalize to the main cryo-EM path.