audit-module-hierarchy

name	audit-module-hierarchy
description	Audit and correct module hierarchy comments and exported symbol ordering in scinoephile __init__.py files using dependency-aware "bubble up" ordering, including cycle detection (for example core/open_ai). Use when package structure changes or when hierarchy comments may be stale.

Audit __init__.py Hierarchy and Exports

Use this workflow to keep __init__.py files consistent with actual imports.

When to use

• A module was moved or renamed.
• A package hierarchy comment looks stale.
• __all__ ordering is inconsistent with current structure.
• You suspect dependency cycles between sibling modules/packages.

Goals

• Keep hierarchy comments truthful: "modules may import from any above."
• Bubble each module to the highest valid level.
• Group peers on the same line with /.
• Report sibling cycles explicitly.
• Keep __all__ aligned with imported/exported symbols and existing style.

Quick workflow

1. Identify __init__.py files:
   • scinoephile/__init__.py (top-level package hierarchy)
   • nested package __init__.py files (for example scinoephile/lang/*/__init__.py)
2. Run the helper script:
   • python skills/audit-module-hierarchy/scripts/audit_module_hierarchy.py --target scinoephile
3. Review output:
   • proposed levels per package
   • detected cycles
4. Update hierarchy comment blocks in affected __init__.py files.
5. Check each edited package still matches import reality.
6. Run validation on changed Python files:
   • uv run ruff format <changed_files>
   • uv run ruff check --fix <changed_files>
   • uv run ty check <changed_files>

Ordering rules

• Build edges as importer -> importee.
• Collapse strongly connected components (SCCs); each SCC is a same-level group.
• Assign each SCC level as:
  • 1 if it imports no sibling/module in scope
  • otherwise 1 + max(level(imported_scc))
• Render levels ascending (dependencies first).
• For display, join same-level SCC members using /.
• If a cycle exists, keep that cycle grouped on one line (for example core / open_ai).

Scope guidance

• For repository-wide architecture, analyze top-level packages under scinoephile/.
• For local package docs (for example scinoephile/lang/zho/__init__.py), analyze direct children of that package only.
• Do not infer ordering from filenames; only from imports.

Reporting guidance

When done, report:

• which __init__.py files were updated
• the new hierarchy levels
• any detected cycles
• whether validation checks passed