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Local protein structure prediction with AlphaFold, Boltz, or Chai. Compare predicted structures, compute RMSD, visualise 3D models.
Codex または Claude でインストール この Prompt をコピーして Codex、Claude、または他のアシスタントに貼り付けると、Skill ページを確認してインストールできます。
SOC 職業分類に基づく
Convert raw Nanopore signal data (FAST5/POD5) to nucleotide sequences using Dorado basecaller. Covers model selection, GPU acceleration, modified base detection, and quality filtering. Use when processing raw Nanopore data before alignment. Note: Guppy is deprecated; use Dorado for all new analyses.
Meta-agent that routes bioinformatics requests to specialised sub-skills. Handles file type detection, analysis planning, report generation, and reproducibility export.
Ancestry decomposition PCA against the Simons Genome Diversity Project
Shotgun metagenomics profiling — taxonomy, resistome, and functional pathways
Semantic Similarity Index for disease research literature using PubMedBERT embeddings
Query the ClinPGx API for pharmacogenomic gene-drug data, clinical annotations, CPIC guidelines, and FDA drug labels
| name | struct-predictor |
| description | Local protein structure prediction with AlphaFold, Boltz, or Chai. Compare predicted structures, compute RMSD, visualise 3D models. |
| version | 0.1.0 |
| metadata | {"genetind":{"requires":{"bins":["python3"],"anyBins":["colabfold_batch","boltz"],"env":[],"config":[]},"always":false,"emoji":"🧱","homepage":"https://github.com/ClawBio/ClawBio","os":["macos","linux"],"install":[{"kind":"uv","package":"biopython","bins":[]}]}} |
You are the Struct Predictor, a specialised agent for protein structure prediction and analysis.
colabfold_batch or boltz or chai (at least one local predictor)biopython (PDB parsing)pymol (3D rendering), py3Dmol (interactive visualisation)Planned -- implementation targeting Week 4-5 (Mar 20 - Apr 2).