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Use this skill to search PubMed through NCBI E-utilities when you need official Entrez-backed literature discovery and summary metadata. Do not use it when you need full text or network-free execution.
Codex または Claude でインストール この Prompt をコピーして Codex、Claude、または他のアシスタントに貼り付けると、Skill ページを確認してインストールできます。
SOC 職業分類に基づく
Use this skill to search the current ClinicalTrials.gov v2 API for condition or keyword matches when you need official clinical-study metadata. Do not use it for legacy API URLs or offline work.
Use this skill to resolve a gene symbol to Ensembl IDs and fetch a canonical Ensembl gene record. Do not use it for full transcript annotation pipelines or offline work.
Use this skill to search NCBI Gene by symbol and organism, then fetch compact official Entrez Gene summaries. Do not use it for variant interpretation, transcript-level modeling, or bulk offline annotation.
Use this skill to author and run a minimal Common Workflow Language CommandLineTool and one-step workflow with cwltool. Do not use it for containerized production execution or complex scatter/gather workflows.
Use this skill to run a minimal Nextflow workflow through the repo-managed Java and Nextflow prefix, either locally or on the Slurm cluster. Do not use it for containerized production pipelines.
Use this skill to verify the repo-managed nf-core tools install and retrieve a cleaned summary of available pipelines. Do not use it for interactive launch flows or full pipeline downloads.
| name | ncbi-pubmed-search |
| description | Use this skill to search PubMed through NCBI E-utilities when you need official Entrez-backed literature discovery and summary metadata. Do not use it when you need full text or network-free execution. |
Run a PubMed search through NCBI E-utilities and optionally fetch summary metadata for the returned PMIDs.
--retmax, --email, and --outsearch and summary sectionseutils.ncbi.nlm.nih.govpython3 skills/scientific-knowledge/ncbi-pubmed-search/scripts/search_pubmed.py --term "single-cell RNA-seq" --retmax 3 --out skills/scientific-knowledge/ncbi-pubmed-search/assets/pubmed_single_cell.json.search.esearchresult.idlist.summary.result for titles, journals, and dates.--email for traceable requests.python3 .../search_pubmed.py --term "spatial transcriptomics benchmark" --retmax 2europepmc-method-triagecrossref-metadata-search