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Use this skill to submit a short identifier list to Reactome Analysis Service and return compact pathway enrichment summaries. Do not use it for full downstream statistical analysis or unsupported identifier normalization.
Codex または Claude でインストール この Prompt をコピーして Codex、Claude、または他のアシスタントに貼り付けると、Skill ページを確認してインストールできます。
SOC 職業分類に基づく
Use this skill to search the current ClinicalTrials.gov v2 API for condition or keyword matches when you need official clinical-study metadata. Do not use it for legacy API URLs or offline work.
Use this skill to resolve a gene symbol to Ensembl IDs and fetch a canonical Ensembl gene record. Do not use it for full transcript annotation pipelines or offline work.
Use this skill to search NCBI Gene by symbol and organism, then fetch compact official Entrez Gene summaries. Do not use it for variant interpretation, transcript-level modeling, or bulk offline annotation.
Use this skill to author and run a minimal Common Workflow Language CommandLineTool and one-step workflow with cwltool. Do not use it for containerized production execution or complex scatter/gather workflows.
Use this skill to run a minimal Nextflow workflow through the repo-managed Java and Nextflow prefix, either locally or on the Slurm cluster. Do not use it for containerized production pipelines.
Use this skill to verify the repo-managed nf-core tools install and retrieve a cleaned summary of available pipelines. Do not use it for interactive launch flows or full pipeline downloads.
| name | reactome-identifiers-enrichment |
| description | Use this skill to submit a short identifier list to Reactome Analysis Service and return compact pathway enrichment summaries. Do not use it for full downstream statistical analysis or unsupported identifier normalization. |
Run a lightweight Reactome pathway over-representation query from a small list of identifiers and summarize the top enriched pathways.
--identifiers or --input-filereactome.orgpython3 skills/systems-biology/reactome-identifiers-enrichment/scripts/analyze_reactome_identifiers.py --identifiers BRCA1,TP53 --page-size 5 --out skills/systems-biology/reactome-identifiers-enrichment/assets/brca1_tp53_enrichment.json.pathways for stable_id, name, species, entities_fdr, entities_p_value, and reactions_found.identifiers_not_found before using the results downstream.pathways contains at least one Reactome stable ID for a known human gene list.stable_id, name, and numeric enrichment statistics.python3 skills/systems-biology/reactome-identifiers-enrichment/scripts/analyze_reactome_identifiers.py --identifiers BRCA1,TP53 --page-size 3reactome-event-summaryncbi-gene-search