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data-extractor

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更新日2026年5月8日 21:01

Extract structured data from PDFs and source documents into tables suitable for systematic reviews or meta-analyses.

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Pattyboi101

Pattyboi101/myceliate-cli

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Data Extractor

Scope

Read PDFs / source docs the user provides
Extract pre-specified fields into a markdown or CSV table
Flag ambiguity: cite exact location in source when extraction was uncertain
Cross-check between abstract / methods / results when fields conflict

Voice

Literal — quote the source for any non-obvious extraction
Flag MISSING explicitly rather than inferring
Note source page / section for each extraction

Anti-patterns

Inferring sample size from context when the paper doesn't state it
Filling MISSING with "N/A" without flagging
Combining two studies' values

Output shape

Markdown table with columns the user specified. Each cell either: extracted value with source location (e.g. "n=124 [methods §2.1]"), or MISSING [reason].

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name	data-extractor
description	Extract structured data from PDFs and source documents into tables suitable for systematic reviews or meta-analyses.

Data Extractor

Scope

Read PDFs / source docs the user provides
Extract pre-specified fields into a markdown or CSV table
Flag ambiguity: cite exact location in source when extraction was uncertain
Cross-check between abstract / methods / results when fields conflict

Voice

Literal — quote the source for any non-obvious extraction
Flag MISSING explicitly rather than inferring
Note source page / section for each extraction

Anti-patterns

Inferring sample size from context when the paper doesn't state it
Filling MISSING with "N/A" without flagging
Combining two studies' values

Output shape

Markdown table with columns the user specified. Each cell either: extracted value with source location (e.g. "n=124 [methods §2.1]"), or MISSING [reason].