Codex-Scientist

Write CodexScientist-aware implementation, experiment-roadmap, code-only, and formal-command plans with TDD and durable quest outputs.

Use when a quest needs one or more follow-up runs such as ablations, robustness checks, error analysis, or failure analysis after a main experiment.

Use when a quest needs to attach, import, reproduce, repair, verify, compare, or publish a baseline and its metrics.

Use when the quest needs an explicit go, stop, branch, reuse-baseline, write, finalize, reset, or user-decision transition with reasons and evidence.

Execute CodexScientist project experiment command documents with durable cs_* logging, manifest validation, and cautious baseline-gate handling.

Use when a quest is ready for a concrete implementation pass or a main experiment run tied to a selected idea and an accepted baseline.

Use when the quest is ready to consolidate final claims, limitations, recommendations, summary state, and graph exports before stopping or archiving.

Use when a quest needs concrete hypotheses, limitation analysis, candidate directions, or a selected idea relative to the active baseline.

Use when a quest does not start from a blank state and the agent must first audit, trust-rank, and reconcile existing baselines, results, drafts, or review materials before choosing the next anchor.

Use when an algorithm-first quest should manage candidate briefs, optimization frontier, branch promotion, or fusion-aware search instead of the paper-oriented default loop.

Use when a CodexScientist project needs project-local paper retrieval, arXiv/OpenReview PDF reading, or official resource verification without clipping into llm-wiki.

Verify paper reliability through the bundled CodexScientist verifier workflow before using papers as evidence.

Create durable CodexScientist project handoff documents, AGENTS.md files, researcher packages, and verified sync artifacts.

Run a skeptical evidence-grounded CodexScientist review pass for drafts, paper-like reports, claim scope, and follow-up routing.

Use when a quest needs problem framing, literature scouting, dataset or metric clarification, or baseline discovery before deeper work.

Strict literature research mode for CodexScientist projects: broad candidate scouting first, reliability verification, conservative filtering, project-local PDF download, then iterative bibliography reading notes before answering/writing.

Use when a quest has enough evidence to draft or refine a paper, report, or research summary without inventing missing support.

Write CodexScientist-aware implementation, experiment-roadmap, code-only, and formal-command plans with TDD and durable quest outputs.

Compact Codex-Scientist router for codexscientist-analysis-campaign; use for its research stage while keeping Codex-native operations outside the plugin runtime.

Compact Codex-Scientist router for codexscientist-baseline; use for its research stage while keeping Codex-native operations outside the plugin runtime.

Low-token router for CodexScientist in Codex CLI. MCP-only default for research-control workflows after Codex has entered ordinary or goal context.

Compact Codex-Scientist router for codexscientist-decision; use for its research stage while keeping Codex-native operations outside the plugin runtime.

Compact Codex-Scientist router for codexscientist-experiment-execution; use for its research stage while keeping Codex-native operations outside the plugin runtime.

Compact Codex-Scientist router for codexscientist-experiment; use for its research stage while keeping Codex-native operations outside the plugin runtime.

Compact Codex-Scientist router for codexscientist-finalize; use for its research stage while keeping Codex-native operations outside the plugin runtime.

Compact Codex-Scientist router for codexscientist-idea; use for its research stage while keeping Codex-native operations outside the plugin runtime.

Compact Codex-Scientist router for codexscientist-intake-audit; use for its research stage while keeping Codex-native operations outside the plugin runtime.

Compact Codex-Scientist router for codexscientist-optimize; use for its research stage while keeping Codex-native operations outside the plugin runtime.

Compact Codex-Scientist router for codexscientist-paper-fetch; use for its research stage while keeping Codex-native operations outside the plugin runtime.

Compact Codex-Scientist router for paper reliability verification; use for bounded reliability checks while keeping Codex-native operations outside the plugin runtime.

Compact Codex-Scientist router for codexscientist-paper-reliability-verifier; use for its research stage while keeping Codex-native operations outside the plugin runtime.

Create durable CodexScientist research handoff documents, AGENTS.md files, researcher packages, and verified sync artifacts.

Compact Codex-Scientist router for codexscientist-rebuttal; use for its research stage while keeping Codex-native operations outside the plugin runtime.

Compact Codex-Scientist router for codexscientist-review; use for its research stage while keeping Codex-native operations outside the plugin runtime.

Compact Codex-Scientist router for codexscientist-scout; use for its research stage while keeping Codex-native operations outside the plugin runtime.

Strict literature research mode for CodexScientist projects: broad candidate scouting first, reliability verification, conservative filtering, project-local PDF download, then iterative bibliography reading notes before answering/writing.

Compact Codex-Scientist router for codexscientist-write; use for its research stage while keeping Codex-native operations outside the plugin runtime.

Compact Codex-Scientist router for codexscientist-writing-plans; use for its research stage while keeping Codex-native operations outside the plugin runtime.

Execute CodexScientist quest experiment command documents with durable cs_* logging, manifest validation, and cautious baseline-gate handling.

Verify paper reliability through the bundled CodexScientist verifier workflow before using papers as evidence.