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eqtl-catalogue-skill

スター16

フォーク2

更新日2026年6月9日 04:10

Submit compact eQTL Catalogue API requests for association retrieval and documented metadata endpoints. Use when a user wants concise public eQTL Catalogue summaries

インストール

Codex または Claude でインストールこの Prompt をコピーして Codex、Claude、または他のアシスタントに貼り付けると、Skill ページを確認してインストールできます。

Manusで実行

ソース

SciMiner

SciMiner/sciminer-skills

GitHub リポジトリを開く Creator のリポジトリを見る

ダウンロード

Manusで実行

Operating rules

Use scripts/rest_request.py for all eQTL Catalogue calls.
Use base_url=https://www.ebi.ac.uk/eqtl/api.
Prefer targeted association endpoints over broad list endpoints.
The public API currently appears strict about query validation, and live smoke tests returned intermittent 400/500/timeout failures even with documented parameter sets; treat this source as usable but upstream-fragile.
For association endpoints, the script now backfills compatibility defaults for quant_method, p_lower, p_upper, and blank filter strings because the live API is currently rejecting omitted optional filters.
Prefer variant_id in requests; the script mirrors it to the legacy snp query key to accommodate the current server-side validator.
Re-run requests in long conversations instead of relying on older tool output.

Execution behavior

Return concise markdown summaries from the script JSON by default.
Return raw JSON only if the user explicitly asks for machine-readable output.
Prefer documented versioned paths such as v3/studies, v3/associations, v3/studies/<study_id>/associations, or legacy v1/.../associations routes with explicit filters, and surface upstream 400/500 errors verbatim when they occur.

Input

Read one JSON object from stdin.
Required fields: base_url, path
Optional fields: method, params, headers, json_body, form_body, record_path, response_format, max_items, max_depth, timeout_sec, save_raw, raw_output_path
Common eQTL Catalogue patterns:
- {"base_url":"https://www.ebi.ac.uk/eqtl/api","path":"v3/studies","max_items":10}
- {"base_url":"https://www.ebi.ac.uk/eqtl/api","path":"v3/associations","params":{"gene_id":"ENSG00000141510","rsid":"rs7903146","size":10},"max_items":10}
- {"base_url":"https://www.ebi.ac.uk/eqtl/api","path":"v1/genes/ENSG00000141510/associations","params":{"variant_id":"rs7903146","size":10},"max_items":10}

Output

Success returns ok, source, path, method, status_code, warnings, and either compact records or a compact summary.
Use raw_output_path when save_raw=true.
Failure returns ok=false with error.code and error.message.

Execution

echo '{"base_url":"https://www.ebi.ac.uk/eqtl/api","path":"v3/studies","max_items":10}' | python scripts/rest_request.py

References

No additional runtime references are required; keep the import package limited to this file and scripts/rest_request.py.

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name	eqtl-catalogue-skill
description	Submit compact eQTL Catalogue API requests for association retrieval and documented metadata endpoints. Use when a user wants concise public eQTL Catalogue summaries

Operating rules

Use scripts/rest_request.py for all eQTL Catalogue calls.
Use base_url=https://www.ebi.ac.uk/eqtl/api.
Prefer targeted association endpoints over broad list endpoints.
The public API currently appears strict about query validation, and live smoke tests returned intermittent 400/500/timeout failures even with documented parameter sets; treat this source as usable but upstream-fragile.
For association endpoints, the script now backfills compatibility defaults for quant_method, p_lower, p_upper, and blank filter strings because the live API is currently rejecting omitted optional filters.
Prefer variant_id in requests; the script mirrors it to the legacy snp query key to accommodate the current server-side validator.
Re-run requests in long conversations instead of relying on older tool output.

Execution behavior

Return concise markdown summaries from the script JSON by default.
Return raw JSON only if the user explicitly asks for machine-readable output.
Prefer documented versioned paths such as v3/studies, v3/associations, v3/studies/<study_id>/associations, or legacy v1/.../associations routes with explicit filters, and surface upstream 400/500 errors verbatim when they occur.

Input

Read one JSON object from stdin.
Required fields: base_url, path
Optional fields: method, params, headers, json_body, form_body, record_path, response_format, max_items, max_depth, timeout_sec, save_raw, raw_output_path
Common eQTL Catalogue patterns:
- {"base_url":"https://www.ebi.ac.uk/eqtl/api","path":"v3/studies","max_items":10}
- {"base_url":"https://www.ebi.ac.uk/eqtl/api","path":"v3/associations","params":{"gene_id":"ENSG00000141510","rsid":"rs7903146","size":10},"max_items":10}
- {"base_url":"https://www.ebi.ac.uk/eqtl/api","path":"v1/genes/ENSG00000141510/associations","params":{"variant_id":"rs7903146","size":10},"max_items":10}

Output

Success returns ok, source, path, method, status_code, warnings, and either compact records or a compact summary.
Use raw_output_path when save_raw=true.
Failure returns ok=false with error.code and error.message.

Execution

echo '{"base_url":"https://www.ebi.ac.uk/eqtl/api","path":"v3/studies","max_items":10}' | python scripts/rest_request.py

References

No additional runtime references are required; keep the import package limited to this file and scripts/rest_request.py.