graph

name	graph
description	Explore and analyze the SWARM knowledge graph — detect orphan claims, find dense connection clusters, trace evidence chains, identify synthesis opportunities. Triggers on "/graph", "graph analysis", "find orphans", "what connects to X".
user-invocable	true
allowed-tools	Read, Glob, Grep, Bash, mcp__qmd__deep_search
context	fork

EXECUTE NOW

Target: $ARGUMENTS

• If empty: run full graph health report
• If "orphans": detect claims with no incoming links
• If "clusters": find dense connection clusters (potential synthesis opportunities)
• If "trace [claim]": trace all evidence chains involving that claim
• If "backlinks [claim]": find everything that cites that claim

---

Graph

Analyze the SWARM knowledge graph structure.

Core Queries

Orphan Detection

# Claims with no incoming wiki-links from other claims
for f in vault/claims/*.md; do
  name=$(basename "$f" .md)
  count=$(rg "\[\[$name\]\]" vault/claims/ vault/experiments/ vault/failures/ vault/governance/ vault/methods/ vault/sweeps/ --include="*.md" 2>/dev/null | wc -l | tr -d ' ')
  if [ "$count" -eq 0 ]; then
    echo "ORPHAN: $name"
  fi
done

Link Density

# Top 10 most-cited claims (knowledge hubs)
for f in vault/claims/*.md; do
  name=$(basename "$f" .md)
  count=$(rg "\[\[$name\]\]" vault/ --include="*.md" 2>/dev/null | wc -l | tr -d ' ')
  echo "$count $name"
done | sort -rn | head -10

Evidence Chain Trace

For a given claim, trace the evidence chain:

1. Find the claim's run_id references
2. Check if those runs have experiment notes
3. Check what other claims cite the same run_id
4. Surface the full evidence provenance

Cross-Domain Connections

# Find claims citing claims from different domains
# (governance claim citing topology claim, etc.)
rg '^domain: ' vault/claims/*.md

Synthesis Opportunities

Using semantic search, find claim pairs that make complementary arguments not yet connected:

mcp__qmd__deep_search  query="[governance mechanism interaction not yet linked]"  collection="vault"  limit=10

Output Format

Graph Report — SWARM Research OS

Orphans: N claims with no incoming links
  - [claim name] (no citations)
  ...

Top hubs (most cited):
  1. [claim] — N citations
  2. [claim] — N citations
  ...

Synthesis opportunities:
  - [[claim A]] + [[claim B]] — complementary mechanisms not yet connected
  ...

Evidence chain density:
  Claims with 0 supporting runs: N
  Claims with 1 supporting run:  N
  Claims with 2+ supporting runs: N