using-kilroy

name	using-kilroy
description	Operate Kilroy Attractor pipelines end-to-end: ingest English requirements into DOT graphs, validate graph semantics, run and resume pipelines with run config files, configure provider backends (cli/api), and debug runs from logs_root artifacts and checkpoints.

Using Kilroy

Kilroy is a local-first Attractor runner:

1. Generate a DOT pipeline from English requirements.
2. Validate DOT structure + semantics.
3. Run in an isolated git worktree with checkpoint commits.
4. Resume interrupted runs from logs, CXDB, or run branch.

If you only need to delegate a one-shot task to a single agent (investigation, research, a small code change you don't need to supervise live), use skills/quick-launch/ instead — it's the fire-and-forget workflow built on top of this command surface and handles tagging, detached launch, and result retrieval with one command each.

Command Surface

Use these exact command forms:

kilroy attractor run [--preflight|--test-run] [--detach] [--tmux] [--allow-test-shim] [--confirm-stale-build] [--no-cxdb] [--skip-cli-headless-warning] [--force-model <provider=model>] [--graph <file.dot>] [--package <dir>] [--config <run.yaml>] [--run-id <id>] [--logs-root <dir>] [--workspace <dir>] [--input <json-or-path>] [--prompt-file <path>] [--label KEY=VALUE]
kilroy attractor resume --logs-root <dir>
kilroy attractor resume --cxdb <http_base_url> --context-id <id>
kilroy attractor resume --run-branch <attractor/run/...> [--repo <path>]
kilroy attractor status [--logs-root <dir> | --latest] [--json] [--follow|-f] [--cxdb] [--raw] [--watch] [--interval <sec>]
kilroy attractor stop --logs-root <dir> [--grace-ms <ms>] [--force]
kilroy attractor runs list [--json] [--label KEY=VALUE] [--status STATUS] [--graph PATTERN] [--limit N]
kilroy attractor runs show (<id-or-prefix> | --latest [--label KEY=VALUE]) [--json] [--outputs] [--print <file>]
kilroy attractor runs wait (<id-or-prefix> | --latest [--label KEY=VALUE]) [--timeout <duration>] [--interval <duration>] [--json]
kilroy attractor runs prune [--before YYYY-MM-DD] [--older-than DURATION] [--graph PATTERN] [--label KEY=VALUE] [--orphans] [--dry-run | --yes]
kilroy attractor validate --graph <file.dot>
kilroy attractor ingest [--output <file.dot>] [--model <model>] [--skill <skill.md>] [--repo <path>] [--max-turns <n>] [--no-validate] <requirements>
kilroy attractor serve [--addr <host:port>]

Run flags you may not have seen before

• --package <dir> — load a workflow package (a directory with workflow.toml, graph.dot, scripts/, prompts/). Applies label defaults, validates inputs, materializes scripts into the worktree. Prefer packages over bare graphs for anything reusable.
• --tmux — execute each agent CLI invocation inside a detached tmux session. Required for headless runs that use the Claude/Codex/Gemini CLIs. Combine with --detach for fire-and-forget operation.
• --input <json-or-path> — structured inputs for the graph. Pass a JSON literal (--input '{"key":"value"}') or a path to a JSON/YAML file. Values become KILROY_INPUT_KEY env vars for tool nodes, $input.key placeholders in agent prompts, and sections in .kilroy/INPUT.md. Required inputs are declared via the graph's inputs="key1,key2" attribute.
• --prompt-file <path> — read the file contents verbatim and assign them to the prompt input key. Overrides any prompt already set via --input. Use this instead of inlining multi-line text in a JSON blob — no escaping, no quoting, no newline hazards.
• --no-cxdb — skip the content-addressed event store. Applied automatically when no --config is supplied (the default config doesn't set up cxdb). Explicit in production configs.
• --skip-cli-headless-warning — bypass the interactive CLI-backend confirmation prompt. Applied automatically when stdin isn't a terminal (detached runs, pipes, agent-driven invocations).
• --label KEY=VALUE — attach a label to the run. Repeatable. Labels are stored in the run DB and used by runs list --label and runs prune --label. Always tag detached runs so you can find them later.
• --workspace <dir> — override the workspace dir (default: cwd). If it's a git repo, the engine creates a dedicated run branch + worktree; otherwise it runs in plain-directory mode.

Workflow

1. Run ingest:

kilroy attractor ingest -o pipeline.dot "Build a Go CLI link checker"

2. Validate:

kilroy attractor validate --graph pipeline.dot

3. Create run config (run.yaml or run.json).

4. Run:

kilroy attractor run --graph pipeline.dot --config run.yaml

Optional preflight-only check (validates all preflights, no stage execution):

kilroy attractor run --graph pipeline.dot --config run.yaml --preflight

5. If interrupted, resume from the most convenient source:

kilroy attractor resume --logs-root <path>

6. For long runs, launch detached so work continues after shell/session exits:

./kilroy attractor run --detach --graph pipeline.dot --config run.yaml --run-id <run_id> --logs-root <logs_root>

7. Observe run health and preflight behavior:

./kilroy attractor status --logs-root <logs_root>
cat <logs_root>/preflight_report.json
tail -f <logs_root>/progress.ndjson

8. Intervene when a run is stuck or needs termination:

./kilroy attractor stop --logs-root <logs_root> --grace-ms 30000 --force

Runs: listing, inspecting, cleaning up

Every run (detached or foreground) is recorded in a local SQLite run database. Query it via kilroy attractor runs:

# All runs, newest first
kilroy attractor runs list

# Filter by label (repeatable tags on launch come back here)
kilroy attractor runs list --label task=investigate-gadfly

# Machine-readable
kilroy attractor runs list --json --status running --limit 10

# Full detail for one run (accepts unique prefix)
kilroy attractor runs show 01KP646Y
kilroy attractor runs show 01KP646Y --json

# Latest run matching a label (no id needed)
kilroy attractor runs show --latest --label task=investigate-gadfly

# List just the declared output files
kilroy attractor runs show 01KP646Y --outputs

# Stream a specific output file to stdout
kilroy attractor runs show 01KP646Y --print result.md
kilroy attractor runs show --latest --label task=investigate-gadfly --print result.md

# Block until a run reaches a terminal state
kilroy attractor runs wait 01KP646Y --timeout 10m
kilroy attractor runs wait --latest --label task=investigate-gadfly --timeout 10m

# Clean up old runs (dry-run by default; add --yes to actually delete)
kilroy attractor runs prune --older-than 7d
kilroy attractor runs prune --label experiment=true --yes

runs show output includes worktree_dir, repo_path, run_branch, and logs_root — use these to cd back into a finished run's workspace or feed them to other commands.

Ingest Details

• Uses Claude CLI (KILROY_CLAUDE_PATH override, default executable claude).
• Default model: claude-sonnet-4-5.
• Default repo: current working directory.
• Default skill path auto-detection: <repo>/skills/create-dotfile/SKILL.md, then binary-relative fallbacks (for example <kilroy-prefix>/share/kilroy/skills/create-dotfile/SKILL.md) and Go module-cache roots from binary build metadata.
• If no skill file exists, ingest fails fast.
• --max-turns defaults to 15 when omitted.
• Validation runs by default; use --no-validate to skip.

Validate Semantics

attractor validate runs parse + transforms + validators and fails on error-severity diagnostics.

Key checks:

• Exactly one start node and one exit node.
• Start has no incoming edges; exit has no outgoing edges.
• All nodes reachable from start.
• Edge conditions parse correctly.
• llm_provider required for codergen nodes (shape=box).
• model_stylesheet is optional, but if present must parse.

Run Config (version: 1)

Required fields:

• repo.path
• cxdb.binary_addr
• cxdb.http_base_url
• modeldb.openrouter_model_info_path

Defaults:

• git.run_branch_prefix: attractor/run
• modeldb.openrouter_model_info_update_policy: on_run_start
• modeldb.openrouter_model_info_url: https://openrouter.ai/api/v1/models
• modeldb.openrouter_model_info_fetch_timeout_ms: 5000

Minimal example:

version: 1

repo:
  path: /absolute/path/to/repo

cxdb:
  binary_addr: 127.0.0.1:9009
  http_base_url: http://127.0.0.1:9010

llm:
  providers:
    openai:
      backend: cli
    anthropic:
      backend: api
    google:
      backend: api

modeldb:
  openrouter_model_info_path: /absolute/path/to/openrouter_models.json
  openrouter_model_info_update_policy: on_run_start
  openrouter_model_info_url: https://openrouter.ai/api/v1/models
  openrouter_model_info_fetch_timeout_ms: 5000

git:
  require_clean: true
  run_branch_prefix: attractor/run
  commit_per_node: true

Notes:

• Provider keys accept openai, anthropic, google (gemini alias maps to google), kimi, zai, cerebras, and minimax.
• If a graph node uses provider P, llm.providers.P.backend must be set (api or cli).
• backend: cli is currently supported for openai, anthropic, and google (including the gemini alias).
• In v1 behavior, runs require a clean repo and checkpoint each node.
• Prefer first-class run config policy knobs over env tuning:
  • runtime_policy for stage timeout, stall watchdog, and retry cap.
  • preflight.prompt_probes for prompt-probe mode/transports/policy.

Provider Backends

CLI backend mappings:

• openai -> codex exec --json --sandbox workspace-write -m <model> -C <worktree>
• anthropic -> claude -p --dangerously-skip-permissions --output-format stream-json --verbose --model <model> "<prompt>"
• google -> gemini -p --output-format stream-json --yolo --model <model> "<prompt>"

CLI executable overrides:

• KILROY_CODEX_PATH
• KILROY_CLAUDE_PATH
• KILROY_GEMINI_PATH

API backend credentials:

• OpenAI: OPENAI_API_KEY (OPENAI_BASE_URL optional)
• Anthropic: ANTHROPIC_API_KEY (ANTHROPIC_BASE_URL optional)
• Google: GEMINI_API_KEY or GOOGLE_API_KEY (GEMINI_BASE_URL optional)
• Kimi: KIMI_API_KEY
• Z.ai: ZAI_API_KEY
• Cerebras: CEREBRAS_API_KEY
• MiniMax: MINIMAX_API_KEY

API protocol/base URL/path overrides are configured in llm.providers.<provider>.api in run config.

Run Output and Exit Codes

run and resume print:

• run_id
• logs_root
• worktree
• run_branch
• final_commit

Exit codes:

• 0: final status success (or validation success)
• 1: command failure, validation failure, or non-success final status

Artifacts

Run-level ({logs_root}) commonly includes:

• graph.dot
• manifest.json
• checkpoint.json
• final.json
• run_config.json
• modeldb/openrouter_models.json
• run.tgz
• worktree/

Stage-level ({logs_root}/{node_id}) commonly includes:

• prompt.md
• response.md
• status.json
• stage.tgz
• stdout.log, stderr.log
• events.ndjson, events.json
• cli_invocation.json, cli_timing.json
• api_request.json, api_response.json
• output_schema.json, output.json
• tool_invocation.json, tool_timing.json
• diff.patch

Exact files depend on handler/backend type.

Browser verification notes:

• Browser verify nodes emit tool_browser_artifacts events in {logs_root}/progress.ndjson.
• Collected browser files are stored in {logs_root}/{node_id}/browser_artifacts/; on retries, prior copies are preserved in {logs_root}/{node_id}/attempt_N/browser_artifacts/.

Status Contract for Codergen Nodes

For shape=box nodes:

• llm_provider and llm_model must resolve.
• If backend returns no explicit outcome, Kilroy expects a status.json signal.
• status.json may be written in worktree root; Kilroy copies it into stage directory.
• If auto_status=true, missing status.json becomes success; otherwise stage fails.

Canonical status.json shape:

{
  "status": "success",
  "preferred_label": "",
  "suggested_next_ids": [],
  "context_updates": {},
  "notes": "",
  "failure_reason": ""
}

Valid statuses: success, partial_success, retry, fail, skipped.

Resume Behavior

• --logs-root: direct and most reliable.
• --cxdb --context-id: recovers logs path from recent RunStarted/CheckpointSaved turns.
• --run-branch: derives run id from branch suffix and scans default runs directory for manifest match.

On resume, Kilroy:

• Loads manifest.json, checkpoint.json, and graph.dot.
• Recreates run branch/worktree at checkpoint commit.
• Requires clean repo before continuing.
• Uses the run's snapshotted model catalog from logs_root/modeldb/openrouter_models.json.

Run-Config Immutability Guard

Once a user asks you to run or launch a Kilroy pipeline, the following files are frozen — do NOT modify them without explicit user permission:

• The graph file (.dot)
• The run config file (run.yaml / run.json)
• Any model configuration (catalog files, model IDs in the graph)
• The preferences file (preferences.yaml)

If preflight or launch fails, diagnose and present options — never silently fix the inputs. See "Preflight Failure Playbook" below.

This guard applies from the moment you begin building or executing a kilroy attractor run command until the user explicitly asks for changes. It does NOT apply during graph authoring/editing phases before a run is requested.

Launch Intent Priority

When the user clearly instructs you to start/launch/run Kilroy, begin the run immediately. Do not ask extra "are you sure?" confirmation questions that delay execution.

Rationale: users often issue launch commands right before stepping away, and waiting for an unnecessary confirmation can waste hours.

Execution rule:

• If the requested run config is a production profile (for example llm.cli_profile: real) and the user clearly asked to start the run, start the production run.
• Prefer detached launch for long-running jobs unless the user explicitly requests foreground execution.
• Only stop to ask questions when required launch inputs are genuinely missing or contradictory (for example no graph path and no run config path).

Preflight Failure Playbook

When preflight checks fail, follow this sequence:

1. Read the preflight report: cat <logs_root>/preflight_report.json
2. Diagnose each failure/warning and identify the root cause.
3. Present options to the user with your recommendation:

Failure	Likely Cause	Options
Model not in catalog	Pinned catalog is stale; model is new	(a) Switch run.yaml to on_run_start to fetch live catalog (b) Manually update pinned catalog (c) User confirms model ID is wrong
CLI binary not found	Provider CLI not installed	(a) Install the CLI tool (b) Switch provider to backend: api (c) Use a different provider
API key missing	Env var not set	(a) Set the env var (b) Switch to CLI backend (c) Use a different provider
Prompt probe timeout	Provider is slow/down	(a) Increase preflight.prompt_probes.timeout_ms (b) Retry (c) Disable probes for this run
CLAUDECODE conflict	Running inside Claude Code session	(a) Engine strips it automatically (post-fix); rebuild if on old binary
Repo not clean	Uncommitted changes	(a) Commit changes (b) Stash changes (c) Set git.require_clean: false

4. Wait for user decision before making any changes.
5. After user approves a fix, apply it and re-run.

Never do any of the following without asking:

• Downgrade a model ID (the model may be valid but absent from a stale catalog)
• Change the graph topology or node shapes
• Switch provider backends
• Modify prompt text

CLAUDECODE Environment Variable

When Kilroy runs inside a Claude Code session, the CLAUDECODE env var is set. This causes the Claude CLI to refuse to launch (nested session protection). The engine strips CLAUDECODE from subprocess environments automatically (both preflight probes and codergen CLI invocations). If you encounter this error on an older binary, rebuild with go build -o ./kilroy ./cmd/kilroy.

Frequent Failures

• missing llm.providers.<provider>.backend: add explicit backend in config.
• missing llm_model on node: set llm_model (or stylesheet model that resolves to it).
• missing status.json (auto_status=false): write status file or set auto_status=true.
• repo has uncommitted changes: commit/stash before run or resume.
• could not locate logs_root for run_branch: use --logs-root or --cxdb --context-id.
• resume: missing per-run model catalog snapshot: ensure run logs are intact.

Related Files

• Kilroy metaspec: docs/strongdm/attractor/kilroy-metaspec.md
• Attractor spec: docs/strongdm/attractor/attractor-spec.md
• Ingestor spec: docs/strongdm/attractor/ingestor-spec.md
• Test coverage map: docs/strongdm/attractor/test-coverage-map.md
• Create-dotfile skill: skills/create-dotfile/SKILL.md