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Integrate multiple histone modification ChIP-seq tracks into chromatin states via ChromHMM (with alternatives Segway, EpiSegMix, IDEAS, EpiLogos, full-stack ChromHMM).
Codex 또는 Claude로 설치 이 Prompt를 복사해 Codex, Claude 또는 다른 어시스턴트에 붙여 넣으면 Skill 페이지를 검토하고 설치를 진행할 수 있습니다.
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Workflow for paired or integrated single-cell RNA and ATAC analysis with multimodal latent spaces and regulatory interpretation.
Workflow for spatial transcriptomics preprocessing, domain detection, deconvolution, neighborhood analysis, and publication-ready spatial maps.
| name | bioskills-chromatin-state-segmentation |
| description | Integrate multiple histone modification ChIP-seq tracks into chromatin states via ChromHMM (with alternatives Segway, EpiSegMix, IDEAS, EpiLogos, full-stack ChromHMM). |
| domain | single-cell |
| primary_tool | ChromHMM |
| methods | ["ChromHMM","Segway","EpiSegMix","IDEAS","EpiLogos"] |
| macro_tags | ["chromatin-states","chip-seq","hmm","segmentation","epigenomics"] |
| micro_tags | ["ChromHMM","BinarizeBam","LearnModel","OverlapEnrichment","NeighborhoodEnrichment","Segway","MakeSegmentation","EpiSegMix"] |
| source | bioskills-chromatin-state-segmentation |
| status | active |
| enabled | true |
