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Reference benchmark datasets for proteomics DEA optimization. Contains ground-truth metadata, expected fold-changes, and best-known method configurations. Used by the evaluator to score candidate workflows against known references.
Codex 또는 Claude로 설치 이 Prompt를 복사해 Codex, Claude 또는 다른 어시스턴트에 붙여 넣으면 Skill 페이지를 검토하고 설치를 진행할 수 있습니다.
SOC 직업 분류 기준
Domain heuristics for proteomics differential expression analysis. Covers data-type priors (LFQ, TMT, DIA), setting-specific top methods, ensemble strategies, and conditional rules derived from a 34576-experiment benchmark. Used by proposer and reflector to narrow the search space.
LLM prompt templates for proposing proteomics DEA configurations. Provides the system and user prompts used by the proposer to generate candidate analysis pipelines via tool calling.
LLM prompt templates for reflecting on proteomics DEA experiment results. Guides the reflector to analyze score trajectories, identify parameter drivers, declare convergence, and propose targeted perturbations.
LLM prompt templates for generating final analysis reports. Produces a concise Markdown report covering executive summary, recommended configuration rationale, key findings, and caveats.
| name | proteomics-benchmarks |
| version | 0.1.0 |
| description | Reference benchmark datasets for proteomics DEA optimization. Contains ground-truth metadata, expected fold-changes, and best-known method configurations. Used by the evaluator to score candidate workflows against known references. |
Reference datasets with ground truth for evaluating differential expression analysis workflows.
| Contrast | log2FC |
|---|---|
| A_vs_B | 2.0 |
| A_vs_C | 4.32 |
| A_vs_D | 7.64 |
| B_vs_C | 2.32 |
| B_vs_D | 5.64 |
| C_vs_D | 3.32 |
