메뉴
Work on pysof Python bindings for SQL-on-FHIR. Use for PyO3, maturin, Python package setup, pysof tests, Python APIs, PyPI publishing concerns, and any files under crates/pysof.
Codex 또는 Claude로 설치 이 Prompt를 복사해 Codex, Claude 또는 다른 어시스턴트에 붙여 넣으면 Skill 페이지를 검토하고 설치를 진행할 수 있습니다.
SOC 직업 분류 기준
Run, configure, or debug the main HFS FHIR server. Use for hfs binary startup, HFS environment variables, storage backend selection, multi-tenancy routing, HFS REST endpoints, request/response compression, S3 storage, and server behavior flags.
Work on HFS authentication & authorization. Use for SMART-on-FHIR/OAuth2, JWT bearer validation, JWKS, scopes/permissions, token replay semantics, SMART discovery, and HFS_AUTH_* configuration.
Work on HFS authentication & authorization. Use for SMART-on-FHIR/OAuth2, JWT bearer validation, JWKS, scopes/permissions, token replay semantics, SMART discovery, and HFS_AUTH_* configuration.
Work on HFS audit logging. Use for FHIR AuditEvent, IHE BALP profiles, audit sinks (database/file/CloudWatch), path exclusions, and HFS_AUDIT_* configuration.
Work on SQL-on-FHIR, ViewDefinition processing, sof-cli, sof-server, SOF HTTP configuration, output formats, or parquet export. Use for helios-sof changes, ViewDefinitionTrait behavior, transformation tests, and SOF server endpoints.
Work on the HFS Terminology Server. Use for hts runtime configuration, HTS APIs, terminology import, bootstrap sync, CodeSystem, ValueSet, ConceptMap, SNOMED, LOINC, RxNorm, ICD-10-CM, and HFS terminology integration.
| name | work-with-pysof |
| description | Work on pysof Python bindings for SQL-on-FHIR. Use for PyO3, maturin, Python package setup, pysof tests, Python APIs, PyPI publishing concerns, and any files under crates/pysof. |
Use this when working in crates/pysof or changing Python bindings for SQL-on-FHIR.
pysof is excluded from default workspace builds. Root cargo build does not build it.
pip install pysof
cd crates/pysof
uv venv --python 3.11
uv sync --group dev
uv run maturin develop --release
# Verify
uv run python -c "import pysof; print(pysof.get_version()); print(pysof.get_supported_fhir_versions())"
cd crates/pysof
uv run pytest python-tests/ -v
cargo test
The Python suite has historically had 58 tests, and the Rust pysof suite has historically had 17 tests. Recheck counts from the current tree instead of relying on those numbers when reporting results.
import pysof
# Basic transformation
result = pysof.run_view_definition(view_definition, bundle, "csv")
# With options
result = pysof.run_view_definition_with_options(view, bundle, "json", limit=10, fhir_version="R4")
# Streaming large NDJSON files
for chunk in pysof.ChunkedProcessor(view, "patients.ndjson", chunk_size=500):
process(chunk["rows"])
# File-to-file, most memory efficient
stats = pysof.process_ndjson_to_file(view, "input.ndjson", "output.csv", "csv")