원클릭으로 Manus에서 모든 스킬 실행

phylogenetics

스타34

포크3

업데이트2026년 7월 1일 10:02

Phylogenetics & evolution (mirrors Claude Science's phylogenetics skill). MAFFT alignment + IQ-TREE tree building + selection/ancestral reconstruction, results shown next to the sequences that produced them. Use for multiple-sequence alignment, phylogenetic trees, selection analysis.

설치

Codex 또는 Claude로 설치 이 Prompt를 복사해 Codex, Claude 또는 다른 어시스턴트에 붙여 넣으면 Skill 페이지를 검토하고 설치를 진행할 수 있습니다.

Manus에서 실행

출처

JWM0203

JWM0203/Claude-Science-for-win

GitHub 저장소 열기 Creator 저장소 보기

다운로드

Manus에서 실행

phylogenetics

Alignment MAFFT; trees IQ-TREE (or RAxML); sequence handling Biopython; sequence sources connectors/uniprot.py / ensembl.py.

Standard workflow

Collect sequences (inputs/, record source database + accession).
MAFFT alignment (record parameters) -> outputs/aln.fasta.
IQ-TREE: model selection + bootstrap >= 1000 -> outputs/tree.treefile.
Tree figure (figure-maker) + alignment view; branches correspond to input accessions.
When needed, dN/dS or ancestral reconstruction; state method and assumptions.

Hard rules

Record model, bootstrap, and random seed; every branch traces to an input sequence.

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figure-maker

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Publication-grade figures. Uses matplotlib to generate figures from a script (never hand-drawn, never pasted from an unknown source); each figure has a rerunnable script. Layer the global CCF-Figure skill for figure conventions / top-venue layout. Use to draw paper figures and iterate to publication quality.

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literature-review

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Provenance-backed literature review. Searches PubMed / Europe PMC / arXiv (connectors/literature.py), dedupes, synthesizes by theme, and attaches a DOI/PMID to every conclusion. Use when you need a literature review, evidence for a claim, or a related-work section.

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manuscript

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Manuscript writing and iteration to publication quality. Organizes IMRaD structure, inserts run-generated figures/tables, manages references, and produces docx/pdf/md. Layer the global docx / doc-coauthoring / pdf skills. Use to write a paper draft, methods, results, and iterate.

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원클릭으로 모든 스킬 실행

name	phylogenetics
description	Phylogenetics & evolution (mirrors Claude Science's phylogenetics skill). MAFFT alignment + IQ-TREE tree building + selection/ancestral reconstruction, results shown next to the sequences that produced them. Use for multiple-sequence alignment, phylogenetic trees, selection analysis.