te_cap

Use when creating or editing `environment.yml`, diagnosing conda/mamba dependency conflicts, pinning dependencies, separating runtime vs dev environments, exporting lockfiles, or reproducing a broken environment on a new machine. Also use when the user mentions "conda env", "mamba env", "channels", "solver", or "spec conflict".

Use when working on an R project — editing `DESCRIPTION`, `NAMESPACE`, `renv.lock`, R scripts, R Markdown, testthat tests, roxygen2 docs, or Bioconductor packages. Also use when setting up a new R project, troubleshooting `install.packages` / `BiocManager`, or preparing an R package for CRAN/Bioc submission.

Use when writing, modifying, or reviewing a Singularity `.def` or Apptainer recipe file, especially for bioinformatics tool distribution. Also use when asked about container layering strategy, base image choice, `%post`/`%environment`/`%runscript`/`%test` sections, version pinning inside containers, or multi-stage builds.