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odk-run

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업데이트2026년 3월 28일 17:04

Run custom Make targets or ODK tools that have no dedicated skill. Use when the user wants a one-off make target (other than test, prepare_release, refresh-imports, update_repo, odkversion) or to run Konclude, jena, relation-graph, jinjanate, OORT, souffle, dicer-cli, yq-mf, or sssom-cli. Do not use for robot, owltools, dosdp-tools, fastobo-validator, riot, sparql, runoak, or sssom—use those skills instead.

설치

Codex 또는 Claude로 설치 이 Prompt를 복사해 Codex, Claude 또는 다른 어시스턴트에 붙여 넣으면 Skill 페이지를 검토하고 설치를 진행할 수 있습니다.

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Minitour

Minitour/agentic-ontology-development-kit

GitHub 저장소 열기 Creator 저장소 보기

다운로드

Manus에서 실행

ODK Run Skill

Use this skill when the user needs to run a command that is not covered by a dedicated ODK skill: either a custom Make target in the ontology dir, or one of the other ODK tools (Konclude, Apache Jena, relation-graph, jinjanate, ontology-release-runner, souffle, dicer-cli, yq-mf, sssom-cli). In this Ontology Builder repo the container mounts the project directory (workspace root or projects/<slug>) as /work; use paths relative to that root and make -C ontology <target> (or the Makefile path) as appropriate. For ROBOT, owltools, dosdp-tools, fastobo-validator, riot, sparql, runoak, or sssom, use the corresponding odk-* skill.

When to Use This Skill (by outcome)

User wants a one-off or custom Make target that is not test, prepare_release, refresh-imports, etc. → use odk_run with command: make -C ontology <target> (or make -C <make_path> <target>) (paths relative to the mounted project root, e.g. projects/<project_dir>/ or workspace root).
User wants to run Konclude, jena, relation-graph, jinjanate, OORT, souffle, dicer-cli, yq-mf, or sssom-cli → use odk_run with command set to the full invocation (paths relative to the mounted project root).

What the Tool Does and How It Works

What it does: Runs an arbitrary single command in the ODK environment. Use only for custom make or the tools listed above; for robot, owltools, dosdp-tools, riot, sparql, runoak, sssom, and fastobo-validator use the dedicated skills so the agent loads only what it needs.

How it works: Pass the full command string to odk_run via the command parameter. Optionally pass project_dir (e.g. projects/pizza or projects/owner-repo) to mount that directory at /work; relative paths are resolved from the repo root. If project_dir is omitted or empty, the current working directory is mounted. Paths in command are relative to the mounted root. Example: make -C ontology custom-target or Konclude -i ontology/edit.owl -o ontology/out.owl.

When Not to Use This Skill

ROBOT → use odk-robot and odk_robot.
owltools → use odk-owltools and odk_owltools.
dosdp-tools → use odk-dosdp-tools and odk_dosdp_tools.
fastobo-validator → use odk-fastobo-validator and odk_fastobo_validator.
riot → use odk-riot and odk_riot.
sparql → use odk-robot and odk_robot with query.
runoak → use odk-runoak and odk_runoak.
sssom → use odk-sssom and odk_sssom.
Standard ODK Make targets (test, prepare_release, refresh-imports, update_repo, odkversion) → use odk-make and odk_make.
Seeding a repo → use odk-seed and odk_seed.

Tool and Arguments

Argument	Type	Required	Description
command	string	yes	Full command (no robot, no owltools/dosdp-tools/riot/sparql/runoak/sssom/fastobo-validator). E.g. `make -C ontology custom-target`, `Konclude -i edit.owl -o out.owl`. Paths relative to the mounted project root.
project_dir	string	no	Optional. Project root to mount at `/work` (e.g. `projects/pizza`, `projects/owner-repo`). Relative paths resolved from repo root. Omit or leave empty to use current working directory.

Examples (calling the tool)

Custom make (workspace): odk_run with command: make -C ontology some-custom-target
Custom make (clone): odk_run with command: make -C ontology some-custom-target, project_dir: projects/owner-repo
Konclude: odk_run with command: Konclude -i edit.owl -o classified.owl (optionally with project_dir if running in a project)
Other tool: odk_run with command: <tool> --help then the full invocation the user needs

Tool Requirement

This skill requires: odk_run

After learning this skill, call setup_tools(skills: ["odk-run"]) to activate the tool, then use call_tool(name: "odk_run", data: {"command": "..."}) to invoke it.

이 저장소의 다른 Skills

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Minitour/agentic-ontology-development-kit

Search ontology registries for existing terms to reuse before defining new ones. Use during Step 2 (Knowledge Exploration) and Step 3 (Knowledge Organization), or whenever the user asks to find existing ontology terms, search OLS, look up IRIs, check if a concept already exists, or reuse external terms—e.g. "find an existing class for fatigue", "search OLS for cancer", "is there an ontology term for this?", "reuse terms from OBO Foundry".

2026-04-110

cq-verification

Minitour/agentic-ontology-development-kit

Verify competency questions against an OWL ontology using SPARQL queries with test data. Use to verify every CQ with real query execution. Also use whenever the user asks to test, validate, or verify an ontology against its CQs, run SPARQL verification, check CQ coverage, or asks "does the ontology answer the competency questions?"—e.g. "verify CQs", "test the ontology", "run CQ checks", "validate against competency questions".

2026-03-290

ontology-editor

Minitour/agentic-ontology-development-kit

Read, edit, and manage OWL ontologies with OWL-MCP (axioms, prefixes, metadata, pitfall scanning). Use whenever the user wants to add or remove axioms, search axioms, add prefixes, set the ontology IRI, inspect ontology metadata, scan for pitfalls, or formalize an ontology in OWL—e.g. "add this axiom", "find axioms for class X", "add prefix", "check for pitfalls". Align with Ontology Builder workflow (formalization step); use absolute paths for OWL files. Never edit OWL files by hand.

2026-03-290

odk-robot

Minitour/agentic-ontology-development-kit

Run ROBOT for ontology QC, merge, reason, convert, template, or query. Use whenever the user needs to verify an ontology, validate OWL profile, merge OWL files, run a reasoner, convert OWL/OBO, build terms from CSV+template, or run SPARQL/DL over an ontology—e.g. "run robot verify", "merge these OWL files", "convert to OBO", "template from this CSV". This is the only skill for ROBOT; do not use odk-run for robot.

2026-03-280

odp-pattern-selector

Minitour/agentic-ontology-development-kit

Browse and select Ontology Design Patterns (ODPs) from the ODP catalogue for ontology modeling. Use whenever the user needs to choose a modeling pattern, asks "how should I model X?", wants to represent parts, roles, events, time, collections, situations, n-ary relations, or any recurring ontology structure. Also use proactively during Step 3 (Knowledge Organization) and Step 4 (Draft Proposal) of the ontology-builder workflow when identifying candidate axiom patterns. Covers 55+ patterns from ontologydesignpatterns.org and the ODPA repository.

2026-03-210

analyze-project

Minitour/agentic-ontology-development-kit

Understand a target ontology repo's structure, contribution workflow, and build setup. Use whenever the user wants to analyze an ontology repository, learn how to contribute to a project, understand repo layout, or inspect CONTRIBUTING/issue/PR conventions—e.g. "analyze this ontology repo", "how do I contribute to this project", "what's the structure of this repo", or when they provide a repo URL. Prefer this skill over ad-hoc inspection when contributing to external ontologies.

2026-03-070

name

odk-run

description

ODK Run Skill

When to Use This Skill (by outcome)

User wants a one-off or custom Make target that is not test, prepare_release, refresh-imports, etc. → use odk_run with command: make -C ontology <target> (or make -C <make_path> <target>) (paths relative to the mounted project root, e.g. projects/<project_dir>/ or workspace root).
User wants to run Konclude, jena, relation-graph, jinjanate, OORT, souffle, dicer-cli, yq-mf, or sssom-cli → use odk_run with command set to the full invocation (paths relative to the mounted project root).

What the Tool Does and How It Works

When Not to Use This Skill

ROBOT → use odk-robot and odk_robot.
owltools → use odk-owltools and odk_owltools.
dosdp-tools → use odk-dosdp-tools and odk_dosdp_tools.
fastobo-validator → use odk-fastobo-validator and odk_fastobo_validator.
riot → use odk-riot and odk_riot.
sparql → use odk-robot and odk_robot with query.
runoak → use odk-runoak and odk_runoak.
sssom → use odk-sssom and odk_sssom.
Standard ODK Make targets (test, prepare_release, refresh-imports, update_repo, odkversion) → use odk-make and odk_make.
Seeding a repo → use odk-seed and odk_seed.

Tool and Arguments

Argument	Type	Required	Description
command	string	yes	Full command (no robot, no owltools/dosdp-tools/riot/sparql/runoak/sssom/fastobo-validator). E.g. `make -C ontology custom-target`, `Konclude -i edit.owl -o out.owl`. Paths relative to the mounted project root.
project_dir	string	no	Optional. Project root to mount at `/work` (e.g. `projects/pizza`, `projects/owner-repo`). Relative paths resolved from repo root. Omit or leave empty to use current working directory.

Examples (calling the tool)

Custom make (workspace): odk_run with command: make -C ontology some-custom-target
Custom make (clone): odk_run with command: make -C ontology some-custom-target, project_dir: projects/owner-repo
Konclude: odk_run with command: Konclude -i edit.owl -o classified.owl (optionally with project_dir if running in a project)
Other tool: odk_run with command: <tool> --help then the full invocation the user needs

Tool Requirement

This skill requires: odk_run

After learning this skill, call setup_tools(skills: ["odk-run"]) to activate the tool, then use call_tool(name: "odk_run", data: {"command": "..."}) to invoke it.